get_raw_counts: Matrix of raw read counts
In anthony-aylward/exploreatacseq: Exploratory Analysis of ATAC-seq data
Description
Usage
Arguments
Value
Description
produce a matrix of raw read counts per peak
Usage
1
get_raw_counts(peaks, reads_file_paths, cores = 1)
Arguments
peaks
Granges object representing consensus peaks
reads_file_paths
list or named character vector giving paths to BAM
files
cores
number of cores to use
Value
matrix of read counts
anthony-aylward/exploreatacseq documentation built on May 10, 2021, 8:45 a.m.
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Description Usage Arguments Value
Description
produce a matrix of raw read counts per peak
Usage
1 | get_raw_counts(peaks, reads_file_paths, cores = 1)
|
Arguments
peaks |
Granges object representing consensus peaks |
reads_file_paths |
list or named character vector giving paths to BAM files |
cores |
number of cores to use |
Value
matrix of read counts
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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