Files in anthony-aylward/exploreatacseq
Exploratory Analysis of ATAC-seq data
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/consensus_peaks.R
R/count_matrix.R
R/data.R
R/explore.R
R/parse_json.R
R/principal_components_analysis.R
R/vignette_utils.R
README.md
data/SCATEData_accession_sample.RData
data/SCATEData_sample.rda
example/pca-untreated-dex_6h_4ug-dex_24h_100ug-pca.png
man/SCATEData_accession_sample.Rd
man/SCATEData_sample.Rd
man/consensus_peaks.Rd
man/coordinates_by_treatment.Rd
man/count_dgelist.Rd
man/explore.Rd
man/exploreatacseq_color_palette.Rd
man/extract_batch_vector.Rd
man/extract_group_vector.Rd
man/extract_peaks_paths_by_sample.Rd
man/extract_reads_file_paths.Rd
man/extract_sample_vector.Rd
man/extract_treatment_vector.Rd
man/extract_tss_enrichments.Rd
man/filter_peaks.Rd
man/generate_pca_plots.Rd
man/get_raw_counts.Rd
man/locate_SCATEData_files.Rd
man/map_paths_to_samples.Rd
man/median_peak_length.Rd
man/most_variable_peaks.Rd
man/parse_input_data.Rd
man/parse_json.Rd
man/peaks_by_sample.Rd
man/plot_pca.Rd
man/preprocess.Rd
man/read_peaks.Rd
man/transform_counts.Rd
man/unify_granges.Rd
man/unify_peaks.Rd
vignettes/.gitignore
vignettes/explore.Rmd
