SCATEData_accession_sample: Table mapping SCATEData accession numbers to sample type
In anthony-aylward/exploreatacseq: Exploratory Analysis of ATAC-seq data
Description
Usage
Format
Source
References
Description
The bioconductor package SCATEData includes 20 BAM files containing
single-cell ATAC-seq data. Each dataset is named by its NCBI Sequence Read
Archive accession number, "SRR1779746.bam". This table lists the sample type
of each dataset.
Usage
1
Format
A data frame with 20 rows and 2 variables:
- accession
SRA accession number
- sample
Sample type
Source
References
Zhicheng Ji, Weiqiang Zhou, Wenpin Hou, Hongkai Ji,
Single-cell ATAC-seq Signal Extraction and Enhancement with SCATE,
Genome Biol 21, 161 (2020)
anthony-aylward/exploreatacseq documentation built on May 10, 2021, 8:45 a.m.
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Description Usage Format Source References
Description
The bioconductor package SCATEData includes 20 BAM files containing single-cell ATAC-seq data. Each dataset is named by its NCBI Sequence Read Archive accession number, "SRR1779746.bam". This table lists the sample type of each dataset.
Usage
1 |
Format
A data frame with 20 rows and 2 variables:
- accession
SRA accession number
- sample
Sample type
Source
References
Zhicheng Ji, Weiqiang Zhou, Wenpin Hou, Hongkai Ji, Single-cell ATAC-seq Signal Extraction and Enhancement with SCATE, Genome Biol 21, 161 (2020)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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