fastLiquidAssociation: functions for genome-wide application of Liquid Association

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This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.

Author
Tina Gunderson
Date of publication
None
Maintainer
Tina Gunderson <gunderson.tina@gmail.com>
License
GPL-2
Version
1.10.0

View on Bioconductor

Man pages

fastboots.GLA-methods
Function to parallelize bootstrapping for MLA robust...
fastLiquidAssociation-package
Functions to extend liquid association (LA) analysis for...
fastMLA-methods
Function to more efficiently screen for gene triplets for...
mass.CNM-methods
Function to obtain CNM significance estimates from an object...
testmat
Example results from fastMLA requiring all significance...

Files in this package

fastLiquidAssociation/DESCRIPTION
fastLiquidAssociation/NAMESPACE
fastLiquidAssociation/R
fastLiquidAssociation/R/fMLASetInternal.R
fastLiquidAssociation/R/fMLASetMethods.R
fastLiquidAssociation/build
fastLiquidAssociation/build/vignette.rds
fastLiquidAssociation/data
fastLiquidAssociation/data/testmat.RData
fastLiquidAssociation/inst
fastLiquidAssociation/inst/doc
fastLiquidAssociation/inst/doc/fastLiquidAssociation.R
fastLiquidAssociation/inst/doc/fastLiquidAssociation.Rnw
fastLiquidAssociation/inst/doc/fastLiquidAssociation.pdf
fastLiquidAssociation/man
fastLiquidAssociation/man/fastLiquidAssociation-package.Rd
fastLiquidAssociation/man/fastMLA-methods.Rd
fastLiquidAssociation/man/fastboots.GLA-methods.Rd
fastLiquidAssociation/man/mass.CNM-methods.Rd
fastLiquidAssociation/man/testmat.Rd
fastLiquidAssociation/vignettes
fastLiquidAssociation/vignettes/50250compNL.jpeg
fastLiquidAssociation/vignettes/PlanBJabref.bib
fastLiquidAssociation/vignettes/fastLiquidAssociation.Rnw
fastLiquidAssociation/vignettes/testmat.csv