fastLiquidAssociation: functions for genome-wide application of Liquid Association
Version 1.12.0

This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.

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AuthorTina Gunderson
Bioconductor views CellBiology GeneExpression Genetics Pathways Software
Date of publicationNone
MaintainerTina Gunderson <gunderson.tina@gmail.com>
LicenseGPL-2
Version1.12.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("fastLiquidAssociation")

Man pages

fastboots.GLA-methods: Function to parallelize bootstrapping for MLA robust...
fastLiquidAssociation-package: Functions to extend liquid association (LA) analysis for...
fastMLA-methods: Function to more efficiently screen for gene triplets for...
mass.CNM-methods: Function to obtain CNM significance estimates from an object...
testmat: Example results from fastMLA requiring all significance...

Functions

boots.gla.se2 Source code
boots.index Source code
clusterGLA Source code
exp.fun Source code
fastLiquidAssociation Man page
fastLiquidAssociation-package Man page
fastMLA Man page
fastMLA,matrix-method Man page
fastMLA-class Man page
fastMLA-methods Man page
fastboots.GLA Man page
fastboots.GLA,ANY,matrix-method Man page
fastboots.GLA-class Man page
fastboots.GLA-methods Man page
jobsplit Source code
makelist Source code
mass.CNM Man page
mass.CNM,matrix,data.frame-method Man page
mass.CNM-class Man page
mass.CNM-methods Man page
namesfun Source code
permute3.se Source code
qqnorm2 Source code
quant.norm Source code
sens.CNM Source code
stand Source code
stand2 Source code
testmat Man page
top.CNM Source code
wrapper Source code

Files

DESCRIPTION
NAMESPACE
R
R/fMLASetInternal.R
R/fMLASetMethods.R
build
build/vignette.rds
data
data/testmat.RData
inst
inst/doc
inst/doc/fastLiquidAssociation.R
inst/doc/fastLiquidAssociation.Rnw
inst/doc/fastLiquidAssociation.pdf
man
man/fastLiquidAssociation-package.Rd
man/fastMLA-methods.Rd
man/fastboots.GLA-methods.Rd
man/mass.CNM-methods.Rd
man/testmat.Rd
vignettes
vignettes/50250compNL.jpeg
vignettes/PlanBJabref.bib
vignettes/fastLiquidAssociation.Rnw
vignettes/testmat.csv
fastLiquidAssociation documentation built on May 20, 2017, 9:14 p.m.