ternarynet: Ternary Network Estimation

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A computational Bayesian approach to ternary gene regulatory network estimation from gene perturbation experiments.

Author
Matthew N. McCall <mccallm@gmail.com>, Anthony Almudevar <Anthony_Almudevar@urmc.rochester.edu>
Date of publication
None
Maintainer
Matthew N. McCall <mccallm@gmail.com>
License
GPL (>= 2)
Version
1.18.0

View on Bioconductor

Man pages

attractorSummary
Summarize Attractors
graphPosterior
Network Topology
plotFit
Network Fit Plot
plotPost
Network Posterior Plot
plotTraces
Network Fit Traces
predictAttractor
Predict the attractor(s) resulting from a given perturbation
simulateSteadyState
Simulate Steady State Data
ternaryFit-class
Ternary Network Fit
ternaryFitParameters-class
Ternary Network Fitting Parameters
ternaryPost-class
Ternary Network Posterior
tnetfit
Ternary Network Fitting
tnetpost
Ternary Network Posterior Sampling

Files in this package

ternarynet/DESCRIPTION
ternarynet/NAMESPACE
ternarynet/R
ternarynet/R/AllClasses.R
ternarynet/R/AllGenerics.R
ternarynet/R/attractorSummary.R
ternarynet/R/graphPosterior.R
ternarynet/R/internal-funcs.R
ternarynet/R/plotFit.R
ternarynet/R/plotPost.R
ternarynet/R/plotTraces.R
ternarynet/R/predictAttractor.R
ternarynet/R/simulateSteadyState.R
ternarynet/R/ternaryFit-methods.R
ternarynet/R/ternaryFitParameters-methods.R
ternarynet/R/ternaryPost-methods.R
ternarynet/R/tnetfit.R
ternarynet/R/tnetpost.R
ternarynet/build
ternarynet/build/vignette.rds
ternarynet/inst
ternarynet/inst/CITATION
ternarynet/inst/doc
ternarynet/inst/doc/ternarynet.R
ternarynet/inst/doc/ternarynet.Rnw
ternarynet/inst/doc/ternarynet.pdf
ternarynet/man
ternarynet/man/attractorSummary.Rd
ternarynet/man/graphPosterior.Rd
ternarynet/man/plotFit.Rd
ternarynet/man/plotPost.Rd
ternarynet/man/plotTraces.Rd
ternarynet/man/predictAttractor.Rd
ternarynet/man/simulateSteadyState.Rd
ternarynet/man/ternaryFit-class.Rd
ternarynet/man/ternaryFitParameters-class.Rd
ternarynet/man/ternaryPost-class.Rd
ternarynet/man/tnetfit.Rd
ternarynet/man/tnetpost.Rd
ternarynet/src
ternarynet/src/tnetfit.cc
ternarynet/src/tnetfuncs.cc
ternarynet/src/tnetfuncs.h
ternarynet/src/tnetpost.cc
ternarynet/vignettes
ternarynet/vignettes/ternarynet.Rnw