API for ternarynet
Ternary Network Estimation

Global functions
ArrayToHash Source code
apply.op Source code
attractor.2 Source code
attractor.2.detail Source code
attractor.distance.summary Source code
attractor.posterior.2 Source code
attractorSummary Man page
backupStage Man page
backupStage,ternaryFitParameters-method Man page
backupStage<- Man page
backupStage<-,ternaryFitParameters-method Man page
beta0 Man page
beta0,ternaryFitParameters-method Man page
beta0<- Man page
beta0<-,ternaryFitParameters-method Man page
chi0 Man page
chi0,ternaryFitParameters-method Man page
chi0<- Man page
chi0<-,ternaryFitParameters-method Man page
class:ternaryFit Man page
class:ternaryFitParameters Man page
class:ternaryPost Man page
condense.attractor Source code
degreeObjMin Man page
degreeObjMin,ternaryFit-method Man page
degreeObjMin<- Man page
degreeObjMin<-,ternaryFit-method Man page
degreeObjs Man page
degreeObjs,ternaryPost-method Man page
degreeObjs<- Man page
degreeObjs<-,ternaryPost-method Man page
delta Man page
delta,ternaryFitParameters-method Man page
delta<- Man page
delta<-,ternaryFitParameters-method Man page
dim,ternaryFit-method Man page
dim,ternaryPost-method Man page
edgePenalty Man page
edgePenalty,ternaryFitParameters-method Man page
edgePenalty<- Man page
edgePenalty<-,ternaryFitParameters-method Man page
epsilon Man page
epsilon,ternaryFitParameters-method Man page
epsilon<- Man page
epsilon<-,ternaryFitParameters-method Man page
experimentNames Man page
experimentNames,ternaryFit-method Man page
experimentNames,ternaryPost-method Man page
experimentNames<- Man page
experimentNames<-,ternaryFit-method Man page
experimentNames<-,ternaryPost-method Man page
f4p Source code
finalTemperature Man page
finalTemperature,ternaryFit-method Man page
finalTemperature<- Man page
finalTemperature<-,ternaryFit-method Man page
geneNames Man page
geneNames,ternaryFit-method Man page
geneNames,ternaryPost-method Man page
geneNames<- Man page
geneNames<-,ternaryFit-method Man page
geneNames<-,ternaryPost-method Man page
getObservedAttractor Source code
graph.posterior.marginal Source code
graphObjMin Man page
graphObjMin,ternaryFit-method Man page
graphObjMin<- Man page
graphObjMin<-,ternaryFit-method Man page
graphObjs Man page
graphObjs,ternaryPost-method Man page
graphObjs<- Man page
graphObjs<-,ternaryPost-method Man page
graphPosterior Man page
initialize,ternaryFit-method Man page
initialize,ternaryFitParameters-method Man page
initialize,ternaryPost-method Man page
inputParams Man page
inputParams,ternaryFit-method Man page
inputParams,ternaryPost-method Man page
inputParams<- Man page
inputParams<-,ternaryFit-method Man page
inputParams<-,ternaryPost-method Man page
m0 Man page
m0,ternaryFitParameters-method Man page
m0<- Man page
m0<-,ternaryFitParameters-method Man page
maxDegree Man page
maxDegree,ternaryFitParameters-method Man page
maxDegree<- Man page
maxDegree<-,ternaryFitParameters-method Man page
maxStage Man page
maxStage,ternaryFitParameters-method Man page
maxStage<- Man page
maxStage<-,ternaryFitParameters-method Man page
maxTransition Man page
maxTransition,ternaryFitParameters-method Man page
maxTransition<- Man page
maxTransition<-,ternaryFitParameters-method Man page
minScore Man page
minScore,ternaryFit-method Man page
minScore<- Man page
minScore<-,ternaryFit-method Man page
ne Man page
ne,ternaryFitParameters-method Man page
ne<- Man page
ne<-,ternaryFitParameters-method Man page
neighborDegree Man page
neighborDegree,ternaryFitParameters-method Man page
neighborDegree<- Man page
neighborDegree<-,ternaryFitParameters-method Man page
newScore Man page
newScore,ternaryFit-method Man page
newScore<- Man page
newScore<-,ternaryFit-method Man page
pAddParent Man page
pAddParent,ternaryFitParameters-method Man page
pAddParent<- Man page
pAddParent<-,ternaryFitParameters-method Man page
pExchangeParent Man page
pExchangeParent,ternaryFitParameters-method Man page
pExchangeParent<- Man page
pExchangeParent<-,ternaryFitParameters-method Man page
pNeighborhood Man page
pNeighborhood,ternaryFitParameters-method Man page
pNeighborhood<- Man page
pNeighborhood<-,ternaryFitParameters-method Man page
perturbationObj Man page
perturbationObj,ternaryFit-method Man page
perturbationObj,ternaryPost-method Man page
perturbationObj<- Man page
perturbationObj<-,ternaryFit-method Man page
perturbationObj<-,ternaryPost-method Man page
perturbationType Man page
perturbationType,ternaryFitParameters-method Man page
perturbationType<- Man page
perturbationType<-,ternaryFitParameters-method Man page
plotFit Man page Source code
plotPost Man page Source code
plotTraces Man page Source code
predictAttractor Man page Source code
read.cc.app Source code
read.cc.app.bool Source code
read.cc.app.posterior Source code
read.cc.app.posterior.bool Source code
read.cc.app.table.version Source code
rho Man page
rho,ternaryFitParameters-method Man page
rho<- Man page
rho<-,ternaryFitParameters-method Man page
score.attractor Source code
scoreType Man page
scoreType,ternaryFitParameters-method Man page
scoreType<- Man page
scoreType<-,ternaryFitParameters-method Man page
scores Man page
scores,ternaryPost-method Man page
scores<- Man page
scores<-,ternaryPost-method Man page
show,ternaryFit-method Man page
show,ternaryFitParameters-method Man page
show,ternaryPost-method Man page
simulateSteadyState Man page Source code
stageCount Man page
stageCount,ternaryFit-method Man page
stageCount<- Man page
stageCount<-,ternaryFit-method Man page
steadyStateObj Man page
steadyStateObj,ternaryFit-method Man page
steadyStateObj,ternaryPost-method Man page
steadyStateObj<- Man page
steadyStateObj<-,ternaryFit-method Man page
steadyStateObj<-,ternaryPost-method Man page
summarize.attractor.1 Source code
summarize.attractor.2 Source code
summarize.attractor.bool Source code
summarize.attractor.calc Source code
tableObjMin Man page
tableObjMin,ternaryFit-method Man page
tableObjMin<- Man page
tableObjMin<-,ternaryFit-method Man page
tableObjs Man page
tableObjs,ternaryPost-method Man page
tableObjs<- Man page
tableObjs<-,ternaryPost-method Man page
ternaryFit Man page Source code
ternaryFit-class Man page
ternaryFit-methods Man page
ternaryFitParameters Man page Source code
ternaryFitParameters-class Man page
ternaryFitParameters-methods Man page
ternaryPost Man page Source code
ternaryPost-class Man page
ternaryPost-methods Man page
tnetfit Man page Source code
tnetpost Man page Source code
traces Man page
traces,ternaryFit-method Man page
traces<- Man page
traces<-,ternaryFit-method Man page
xSeed Man page
xSeed,ternaryFit-method Man page
xSeed<- Man page
xSeed<-,ternaryFit-method Man page
ternarynet documentation built on Oct. 31, 2019, 6:07 a.m.