FISHalyseR: FISHalyseR a package for automated FISH quantification

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

AuthorKaresh Arunakirinathan <akaresh88@gmail.com>, Andreas Heindl <andreas.heindl@icr.ac.uk>
Date of publicationNone
MaintainerKaresh Arunakirinathan <akaresh88@gmail.com>, Andreas Heindl <andreas.heindl@icr.ac.uk>
LicenseArtistic-2.0
Version1.8.0

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Files

FISHalyseR/DESCRIPTION
FISHalyseR/NAMESPACE
FISHalyseR/NEWS
FISHalyseR/R
FISHalyseR/R/CreateVectors.R FISHalyseR/R/FISHalyseR-Ex.R FISHalyseR/R/GetDistances.R FISHalyseR/R/GetStain.R FISHalyseR/R/analyseParticles.R FISHalyseR/R/calculateMaxEntropy.R FISHalyseR/R/calculateThreshold.R FISHalyseR/R/computeIlluminationCorrection.R FISHalyseR/R/processFISH.R
FISHalyseR/build
FISHalyseR/build/vignette.rds
FISHalyseR/inst
FISHalyseR/inst/doc
FISHalyseR/inst/doc/FISHalyseR.R
FISHalyseR/inst/doc/FISHalyseR.Rnw
FISHalyseR/inst/doc/FISHalyseR.pdf
FISHalyseR/inst/extdata
FISHalyseR/inst/extdata/SampleFISH.jpg
FISHalyseR/inst/extdata/SampleFISH_B.jpg
FISHalyseR/inst/extdata/SampleFISH_G.jpg
FISHalyseR/inst/extdata/SampleFISH_R.jpg
FISHalyseR/inst/extdata/SampleFISHgray.jpg
FISHalyseR/inst/extdata/SampleFISHillu.jpg
FISHalyseR/man
FISHalyseR/man/analyseParticles.Rd FISHalyseR/man/calculateMaxEntropy.Rd FISHalyseR/man/calculateThreshold.Rd FISHalyseR/man/computeIlluminationCorrection.Rd FISHalyseR/man/processFISH.Rd
FISHalyseR/vignettes
FISHalyseR/vignettes/FISHalyseR.Rnw

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