FISHalyseR: FISHalyseR a package for automated FISH quantification

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("FISHalyseR")
AuthorKaresh Arunakirinathan <akaresh88@gmail.com>, Andreas Heindl <andreas.heindl@icr.ac.uk>
Bioconductor views CellBiology
Date of publicationNone
MaintainerKaresh Arunakirinathan <akaresh88@gmail.com>, Andreas Heindl <andreas.heindl@icr.ac.uk>
LicenseArtistic-2.0
Version1.10.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/CreateVectors.R R/FISHalyseR-Ex.R R/GetDistances.R R/GetStain.R R/analyseParticles.R R/calculateMaxEntropy.R R/calculateThreshold.R R/computeIlluminationCorrection.R R/processFISH.R
build
build/vignette.rds
inst
inst/doc
inst/doc/FISHalyseR.R
inst/doc/FISHalyseR.Rnw
inst/doc/FISHalyseR.pdf
inst/extdata
inst/extdata/SampleFISH.jpg
inst/extdata/SampleFISH_B.jpg
inst/extdata/SampleFISH_G.jpg
inst/extdata/SampleFISH_R.jpg
inst/extdata/SampleFISHgray.jpg
inst/extdata/SampleFISHillu.jpg
man
man/analyseParticles.Rd man/calculateMaxEntropy.Rd man/calculateThreshold.Rd man/computeIlluminationCorrection.Rd man/processFISH.Rd
vignettes
vignettes/FISHalyseR.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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