FISHalyseR: FISHalyseR a package for automated FISH quantification

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

Package details

AuthorKaresh Arunakirinathan <>, Andreas Heindl <>
Bioconductor views CellBiology
MaintainerKaresh Arunakirinathan <>, Andreas Heindl <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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FISHalyseR documentation built on Nov. 8, 2020, 5:30 p.m.