analyseParticles: Analyse
In FISHalyseR: FISHalyseR a package for automated FISH quantification

Description Usage Arguments Value Author(s) Examples

View source: R/analyseParticles.R

Cleans a given binary image according to area criteria specified by the user.

1	analyseParticles(Image,MaxSize,MinSize, isMask)

`Image`	Binary image
`MaxSize`	Maximum area allowed for objects
`MinSize`	Minimum area allowed for objects
`isMask`	In case isMask=1, the function assumes that the binary images contains nuclei. Nuclei with an area smaller than MaxSize and greater than MinSize will be removed. If isMask=0, the function assumes that the binary images contains probes and subsequently probes with an area smaller than MinSize or larger than MaxSize are removed

Returns a labeled image

Karesh Arunakirinathan

f = system.file( "extdata", "SampleFISHgray.jpg", package="FISHalyseR")
img = readImage(f)

anaImg <- analyseParticles(img, 20000, 1000,0)
## anaImg contains now the cleaned-up image