computeIlluminationCorrection: Multidimensional Illumination Correction
In FISHalyseR: FISHalyseR a package for automated FISH quantification

Function to compute the multidimensional illumination correction (MDIC) using a stack of images

1	computeIlluminationCorrection(Images,pattern='*',AmountOfFiles=6)

`Images`	Directory containing the images
`pattern`	Filenames have to match the pattern specified here
`AmountOfFiles`	Limit the amount of files used to compute the illumination gradient

computeIlluminationCorrection

return the image containing the illumination background

Andreas Heindl

1	illuCorrection = dirname(system.file( "extdata", "SampleFISHillu.jpg", package="FISHalyseR"))

FISHalyseR documentation built on Nov. 8, 2020, 5:30 p.m.

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