cycle: Significance of periodic expression pattern in time-series data

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Package for assessing the statistical significance of periodic expression based on Fourier analysis and comparison with data generated by different background models

Author
Matthias Futschik <mfutschik@ualg.pt>
Date of publication
None
Maintainer
Matthias Futschik <mfutschik@ualg.pt>
License
GPL-2
Version
1.28.0
URLs

View on Bioconductor

Man pages

ar1analysis
Performs AR1 fitting
backgroundData
Generation of background expression set
fdrfourier
Calculation of the false discovery rates (FDR) for periodic...
fourierscore
Calculation of the Fourier score

Files in this package

cycle/DESCRIPTION
cycle/NAMESPACE
cycle/R
cycle/R/ar1analysis.R
cycle/R/backgroundData.R
cycle/R/fdrfourier.R
cycle/R/fourierscore.R
cycle/build
cycle/build/vignette.rds
cycle/inst
cycle/inst/CITATION
cycle/inst/doc
cycle/inst/doc/cycle.R
cycle/inst/doc/cycle.Rnw
cycle/inst/doc/cycle.pdf
cycle/man
cycle/man/ar1analysis.Rd
cycle/man/backgroundData.Rd
cycle/man/fdrfourier.Rd
cycle/man/fourierscore.Rd
cycle/vignettes
cycle/vignettes/cycle.Rnw