cycle: Significance of periodic expression pattern in time-series data
Version 1.30.0

Package for assessing the statistical significance of periodic expression based on Fourier analysis and comparison with data generated by different background models

AuthorMatthias Futschik <mfutschik@ualg.pt>
Bioconductor views Microarray TimeCourse
Date of publicationNone
MaintainerMatthias Futschik <mfutschik@ualg.pt>
LicenseGPL-2
Version1.30.0
URL http://cycle.sysbiolab.eu
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("cycle")

Popular man pages

ar1analysis: Performs AR1 fitting
backgroundData: Generation of background expression set
fdrfourier: Calculation of the false discovery rates (FDR) for periodic...
fourierscore: Calculation of the Fourier score
See all...

All man pages Function index File listing

Man pages

ar1analysis: Performs AR1 fitting
backgroundData: Generation of background expression set
fdrfourier: Calculation of the false discovery rates (FDR) for periodic...
fourierscore: Calculation of the Fourier score

Functions

ar1analysis Man page Source code
backgroundData Man page Source code
fdrfourier Man page Source code
fourierscore Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/ar1analysis.R
R/backgroundData.R
R/fdrfourier.R
R/fourierscore.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/cycle.R
inst/doc/cycle.Rnw
inst/doc/cycle.pdf
man
man/ar1analysis.Rd
man/backgroundData.Rd
man/fdrfourier.Rd
man/fourierscore.Rd
vignettes
vignettes/cycle.Rnw
cycle documentation built on May 20, 2017, 10:54 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.