DiscoRhythm: Interactive Workflow for Discovering Rhythmicity in Biological Data

Set of functions for estimation of cyclical characteristics, such as period, phase, amplitude, and statistical significance in large temporal datasets. Supporting functions are available for quality control, dimensionality reduction, spectral analysis, and analysis of experimental replicates. Contains a R Shiny web interface to execute all workflow steps.

Package details

AuthorMatthew Carlucci [aut, cre], Algimantas Kriščiūnas [aut], Haohan Li [aut], Povilas Gibas [aut], Karolis Koncevičius [aut], Art Petronis [aut], Gabriel Oh [aut]
Bioconductor views GUI PrincipalComponent QualityControl Software TimeCourse Visualization
MaintainerMatthew Carlucci <[email protected]>
LicenseGPL-3
Version1.2.1
URL https://github.com/matthewcarlucci/DiscoRhythm
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("DiscoRhythm")

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DiscoRhythm documentation built on Dec. 1, 2019, 2:52 a.m.