discoDesignSummary: Summarize the experimental design
In DiscoRhythm: Interactive Workflow for Discovering Rhythmicity in Biological Data
Description
Usage
Arguments
Value
See Also
Examples
Description
Using sample times and biological sample Ids, constructs a summary
table of the number of total samples at each timepoint and additionally
summarizes the number of replicates for each biological sample.
Usage
1
discoDesignSummary(Metadata)
Arguments
Metadata
data.frame of sample data, usually generated by
using discoParseMeta on the column names of the Maindata data.frame.
If is.null(Metadata) and Maindata is provided as input, Metadata will
be generated from Maindata.
Value
A table where the first row summarizes the number of datapoints for
each timepoint and other cells indicate the number of technical replicates
for a given biological sample.
See Also
discoParseMeta
Examples
1
2
3
4
# import example data
Metadata <- SummarizedExperiment::colData(discoGetSimu(TRUE))
# Summarize the experiment design
discoDesignSummary(Metadata)
DiscoRhythm documentation built on Nov. 8, 2020, 7:32 p.m.
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Description Usage Arguments Value See Also Examples
Description
Using sample times and biological sample Ids, constructs a summary table of the number of total samples at each timepoint and additionally summarizes the number of replicates for each biological sample.
Usage
1 | discoDesignSummary(Metadata)
|
Arguments
Metadata |
data.frame of sample data, usually generated by
using |
Value
A table where the first row summarizes the number of datapoints for each timepoint and other cells indicate the number of technical replicates for a given biological sample.
See Also
discoParseMeta
Examples
1 2 3 4 | # import example data
Metadata <- SummarizedExperiment::colData(discoGetSimu(TRUE))
# Summarize the experiment design
discoDesignSummary(Metadata)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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