ctsGE: Clustering of Time Series Gene Expression data
Version 1.2.0

Methodology for supervised clustering of potentially many predictor variables, such as genes etc., in time series datasets Provides functions that help the user assigning genes to predefined set of model profiles.

Browse man pages Browse package API and functions Browse package files

AuthorMichal Sharabi-Schwager [aut, cre], Ron Ophir [aut]
Bioconductor views Bayesian Clustering DifferentialExpression GeneExpression GeneSetEnrichment Genetics RNASeq Sequencing TimeCourse Transcription
Date of publicationNone
MaintainerMichal Sharabi-Schwager <michalsharabi@gmail.com>
LicenseGPL-2
Version1.2.0
URL https://github.com/michalsharabi/ctsGE
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ctsGE")

Man pages

ClustIndexes: Clustering the indexes applying K-means
ctsGEShinyApp: GUI for interactive exploration of gene expression data.
index: Indexing function
PlotIndexesClust: Graphic visualization of an index
PreparingTheIndexes: Define an expression index for each gene
readTSGE: Read and merge a set of files containing gene expression data

Functions

ClustIndexes Man page Source code
PlotIndexesClust Man page Source code
PreparingTheIndexes Man page Source code
ctsGEShinyApp Man page Source code
index Man page Source code
readTSGE Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/ClustIndexes.R
R/PlotIndexesClust.R
R/PreparingTheIndexes.R
R/ctsGE.R
R/ctsGEShinyApp.R
README.md
build
build/vignette.rds
inst
inst/doc
inst/doc/ctsGE.R
inst/doc/ctsGE.Rmd
inst/doc/ctsGE.html
inst/extdata
inst/extdata/GSM37929.xls
inst/extdata/GSM37930.xls
inst/extdata/GSM37931.xls
inst/extdata/GSM37932.xls
inst/extdata/GSM37933.xls
inst/extdata/GSM37934.xls
man
man/ClustIndexes.Rd
man/PlotIndexesClust.Rd
man/PreparingTheIndexes.Rd
man/ctsGEShinyApp.Rd
man/index.Rd
man/readTSGE.Rd
tests
tests/testthat
tests/testthat.R
tests/testthat/test.ctsGE.R
vignettes
vignettes/ctsGE.Rmd
ctsGE documentation built on May 20, 2017, 9:29 p.m.