ctsGE: Clustering of Time Series Gene Expression data

Methodology for supervised clustering of potentially many predictor variables, such as genes etc., in time series datasets Provides functions that help the user assigning genes to predefined set of model profiles.

Author
Michal Sharabi-Schwager [aut, cre], Ron Ophir [aut]
Date of publication
None
Maintainer
Michal Sharabi-Schwager <michalsharabi@gmail.com>
License
GPL-2
Version
1.0.0
URLs

View on Bioconductor

Man pages

ClustIndexes
Clustering the indexes applying K-means
ctsGEShinyApp
GUI for interactive exploration of gene expression data.
index
Indexing function
PlotIndexesClust
Graphic visualization of an index
PreparingTheIndexes
Define an expression index for each gene
readTSGE
Read and merge a set of files containing gene expression data

Files in this package

ctsGE/DESCRIPTION
ctsGE/NAMESPACE
ctsGE/R
ctsGE/R/ClustIndexes.R
ctsGE/R/PlotIndexesClust.R
ctsGE/R/PreparingTheIndexes.R
ctsGE/R/ctsGE.R
ctsGE/R/ctsGEShinyApp.R
ctsGE/README.md
ctsGE/build
ctsGE/build/vignette.rds
ctsGE/inst
ctsGE/inst/doc
ctsGE/inst/doc/ctsGE.R
ctsGE/inst/doc/ctsGE.Rmd
ctsGE/inst/doc/ctsGE.html
ctsGE/inst/extdata
ctsGE/inst/extdata/GSM37929.xls
ctsGE/inst/extdata/GSM37930.xls
ctsGE/inst/extdata/GSM37931.xls
ctsGE/inst/extdata/GSM37932.xls
ctsGE/inst/extdata/GSM37933.xls
ctsGE/inst/extdata/GSM37934.xls
ctsGE/man
ctsGE/man/ClustIndexes.Rd
ctsGE/man/PlotIndexesClust.Rd
ctsGE/man/PreparingTheIndexes.Rd
ctsGE/man/ctsGEShinyApp.Rd
ctsGE/man/index.Rd
ctsGE/man/readTSGE.Rd
ctsGE/tests
ctsGE/tests/testthat
ctsGE/tests/testthat.R
ctsGE/tests/testthat/test.ctsGE.R
ctsGE/vignettes
ctsGE/vignettes/ctsGE.Rmd