ImpulseDE: Detection of DE genes in time series data using impulse models

ImpulseDE is suited to capture single impulse-like patterns in high throughput time series datasets. By fitting a representative impulse model to each gene, it reports differentially expressed genes whether across time points in a single experiment or between two time courses from two experiments. To optimize the running time, the code makes use of clustering steps and multi-threading.

AuthorJil Sander [aut, cre], Nir Yosef [aut]
Date of publicationNone
MaintainerJil Sander <jil.sander@uni-bonn.de>, Nir Yosef <niryosef@berkeley.edu>
LicenseGPL-3
Version1.0.0
https://github.com/YosefLab/ImpulseDE

View on Bioconductor

Files in this package

ImpulseDE/DESCRIPTION
ImpulseDE/NAMESPACE
ImpulseDE/NEWS
ImpulseDE/R
ImpulseDE/R/Impulse_DE_fin.R
ImpulseDE/build
ImpulseDE/build/vignette.rds
ImpulseDE/inst
ImpulseDE/inst/doc
ImpulseDE/inst/doc/ImpulseDE.R
ImpulseDE/inst/doc/ImpulseDE.Rmd
ImpulseDE/inst/doc/ImpulseDE.pdf
ImpulseDE/man
ImpulseDE/man/calc_impulse.Rd ImpulseDE/man/impulse_DE.Rd ImpulseDE/man/plot_impulse.Rd
ImpulseDE/vignettes
ImpulseDE/vignettes/ImpulseDE.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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