ImpulseDE: Detection of DE genes in time series data using impulse models

ImpulseDE is suited to capture single impulse-like patterns in high throughput time series datasets. By fitting a representative impulse model to each gene, it reports differentially expressed genes whether across time points in a single experiment or between two time courses from two experiments. To optimize the running time, the code makes use of clustering steps and multi-threading.

Package details

AuthorJil Sander [aut, cre], Nir Yosef [aut]
Bioconductor views Software StatisticalMethod TimeCourse
MaintainerJil Sander <>, Nir Yosef <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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ImpulseDE documentation built on April 28, 2020, 9:05 p.m.