ImpulseDE: Detection of DE genes in time series data using impulse models

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ImpulseDE is suited to capture single impulse-like patterns in high throughput time series datasets. By fitting a representative impulse model to each gene, it reports differentially expressed genes whether across time points in a single experiment or between two time courses from two experiments. To optimize the running time, the code makes use of clustering steps and multi-threading.

Author
Jil Sander [aut, cre], Nir Yosef [aut]
Date of publication
None
Maintainer
Jil Sander <jil.sander@uni-bonn.de>, Nir Yosef <niryosef@berkeley.edu>
License
GPL-3
Version
1.0.0
URLs

View on Bioconductor

Man pages

calc_impulse
Impulse model value prediction
impulse_DE
Differential expression analysis using impulse models
plot_impulse
Plot impulse model fits

Files in this package

ImpulseDE/DESCRIPTION
ImpulseDE/NAMESPACE
ImpulseDE/NEWS
ImpulseDE/R
ImpulseDE/R/Impulse_DE_fin.R
ImpulseDE/build
ImpulseDE/build/vignette.rds
ImpulseDE/inst
ImpulseDE/inst/doc
ImpulseDE/inst/doc/ImpulseDE.R
ImpulseDE/inst/doc/ImpulseDE.Rmd
ImpulseDE/inst/doc/ImpulseDE.pdf
ImpulseDE/man
ImpulseDE/man/calc_impulse.Rd
ImpulseDE/man/impulse_DE.Rd
ImpulseDE/man/plot_impulse.Rd
ImpulseDE/vignettes
ImpulseDE/vignettes/ImpulseDE.Rmd