boyinggong/MethCP: Differential methylation anlsysis for bisulfite sequencing data

MethCP is a differentially methylated region (DMR) detecting method for whole-genome bisulfite sequencing (WGBS) data, which is applicable for a wide range of experimental designs beyond the two-group comparisons, such as time-course data. MethCP identifies DMRs based on change point detection, which naturally segments the genome and provides region-level differential analysis.

Getting started

Package details

Bioconductor views DifferentialMethylation Sequencing TimeCourse WholeGenome
Maintainer
LicenseArtistic-2.0
Version1.1.6
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("boyinggong/MethCP")
boyinggong/MethCP documentation built on April 25, 2021, 6:27 p.m.