ecnuzdd/PhosMap: A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data

PhosMap is a comprehensive R package for analyzing quantitative phosphoproteomics data. Modules in PhosMap were classified into two major categories: (1) data pre-processing and (2) data analysis and presentation. An intact data pre-processing procedure of phosphoproteomics data covered three main steps: merging input files after quality control, mapping phosphorylation sites (p-sites) to the corresponding protein sequence and data normalization. PhosMap incorporated four analysis modules, including clustering and differential expression analysis, time course analysis, kinase activity prediction to find activated/deactivated kinases and motif enrichment analysis.

Getting started

Package details

AuthorDongdong Zhan [aut, cre], Mengsha Tong [aut, cre]
MaintainerDongdong Zhan <[email protected]>
LicenseGPL (>= 2)
Version0.99.12
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("ecnuzdd/PhosMap")
ecnuzdd/PhosMap documentation built on Jan. 10, 2019, 10:39 p.m.