PhosMap is a comprehensive R package for analyzing quantitative phosphoproteomics data. Modules in PhosMap were classified into two major categories: (1) data pre-processing and (2) data analysis and presentation. An intact data pre-processing procedure of phosphoproteomics data covered three main steps: merging input files after quality control, mapping phosphorylation sites (p-sites) to the corresponding protein sequence and data normalization. PhosMap incorporated four analysis modules, including clustering and differential expression analysis, time course analysis, kinase activity prediction to find activated/deactivated kinases and motif enrichment analysis.
|Author||Dongdong Zhan [aut, cre], Mengsha Tong [aut, cre]|
|Maintainer||Dongdong Zhan <[email protected]>|
|License||GPL (>= 2)|
|Package repository||View on GitHub|
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