normalize_nopair_noctrl_by_colmed: For data without pairs and control, normalize them to the...

In ecnuzdd/PhosMap: A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data

For data without pairs and control, normalize them to the median.

Description

For data without pairs and control, normalize them to the median.

Usage

normalize_nopair_noctrl_by_colmed(data_frame)

Arguments

data_frame

a data frame as input.

Value

A data frame after normalization.

Examples

## The process needs to load data from PhosMap datasets stored into FTP server and perform large computation.
## It may take a few minutes.
if(FALSE){
ftp_url <- "ftp://111.198.139.72:4000/pub/PhosMap_datasets/function_demo_data/normalize_nopair_noctrl_by_colmed.RData"
load_data <- load_data_with_ftp(ftp_url, 'RData')
writeBin(load_data, "normalize_nopair_noctrl_by_colmed.RData")
load("normalize_nopair_noctrl_by_colmed.RData")

phospho_data_normalize_by_column <- normalize_nopair_noctrl_by_colmed(
  phospho_data_normalized
)
head(phospho_data_normalize_by_column)
}

ecnuzdd/PhosMap documentation built on Dec. 7, 2022, 4:09 a.m.