API for ecnuzdd/PhosMap
A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data

Global functions
BRAFi Man page
analysis_deps_anova Man page Source code
analysis_deps_limma Man page Source code
analysis_deps_sam Man page Source code
check_mea_input Man page Source code
compute_kses Man page Source code
construct_pwm Man page Source code
extract_psites_score Man page Source code
fore_seq_to_motif Man page Source code
formatted_output_mef_results Man page Source code
generate_psites_score_file Man page Source code
get_aligned_seq_for_mea Man page Source code
get_colors_for_discrete_value Man page Source code
get_combined_data_frame Man page Source code
get_df_with_AAs_i Man page Source code
get_file_info_from_dir Man page Source code
get_file_suffix Man page Source code
get_filtered_df Man page Source code
get_foreground_df_to_motifs Man page Source code
get_foreground_seq_to_motifs Man page Source code
get_global_background_df Man page Source code
get_ka_by_mean_or_mlr Man page Source code
get_ksea_regulons_info Man page Source code
get_ksea_result_list Man page Source code
get_kses Man page Source code
get_list_with_filted_sites Man page Source code
get_merged_phospho_df Man page Source code
get_modification_index Man page Source code
get_motif_analysis_summary Man page Source code
get_motifs_list Man page Source code
get_normalized_data_FOT5 Man page Source code
get_normalized_data_of_psites Man page Source code
get_substrate_expr_df Man page Source code
get_summary_from_ksea Man page Source code
get_summary_with_unique_sites Man page Source code
get_unique_AAs_i_df Man page Source code
hello Man page Source code
keep_psites_with_max_in_topX Man page Source code
mea_based_on_background Man page Source code
merge_profiling_file_from_Firmiana Man page Source code
motif_data_frame_to_sequence Man page Source code
normalize_nopair_ctrl_by_col Man page Source code
normalize_nopair_noctrl_by_colmed Man page Source code
normalize_phos_data_to_profiling Man page Source code
normalize_to_Pair Man page Source code
plot_seqlogo Man page Source code
pre_process_filter_psites Man page Source code
seach_motif_pattern Man page Source code
visualization_deps_with_scatter Man page Source code
visualization_fuzzycluster Man page Source code
visualization_with_simple_pca Man page Source code
visualization_with_simple_tsne Man page Source code
write_csv_pep_seq_conf Man page Source code
ecnuzdd/PhosMap documentation built on Jan. 10, 2019, 10:39 p.m.