API for ecnuzdd/PhosMap
A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data
| Global functions | |
|---|---|
| analysis_deps_anova | Man page Source code |
| analysis_deps_limma | Man page Source code |
| analysis_deps_sam | Man page Source code |
| check_mea_input | Man page Source code |
| compute_kses | Man page Source code |
| construct_pwm | Man page Source code |
| extract_psites_score | Man page Source code |
| fore_seq_to_motif | Man page Source code |
| formatted_output_mef_results | Man page Source code |
| generate_psites_score_file | Man page Source code |
| get_aligned_seq_for_mea | Man page Source code |
| get_colors_for_discrete_value | Man page Source code |
| get_combined_data_frame | Man page Source code |
| get_df_with_AAs_i | Man page Source code |
| get_file_info_from_dir | Man page Source code |
| get_file_suffix | Man page Source code |
| get_filtered_df | Man page Source code |
| get_foreground_df_to_motifs | Man page Source code |
| get_foreground_seq_to_motifs | Man page Source code |
| get_global_background_df | Man page Source code |
| get_ka_by_mean_or_mlr | Man page Source code |
| get_ksea_regulons_info | Man page Source code |
| get_ksea_result_list | Man page Source code |
| get_kses | Man page Source code |
| get_list_with_filtered_sites | Man page Source code |
| get_merged_phospho_df | Man page Source code |
| get_modification_index | Man page Source code |
| get_motif_analysis_summary | Man page Source code |
| get_motifs_list | Man page Source code |
| get_normalized_data_FOT5 | Man page Source code |
| get_normalized_data_of_psites | Man page Source code |
| get_substrate_expr_df | Man page Source code |
| get_summary_from_ksea | Man page Source code |
| get_summary_with_unique_sites | Man page Source code |
| get_unique_AAs_i_df | Man page Source code |
| keep_psites_with_max_in_topX | Man page Source code |
| load_data_with_ftp | Man page Source code |
| load_data_with_http | Man page Source code |
| mea_based_on_background | Man page Source code |
| merge_profiling_file_from_Firmiana | Man page Source code |
| motif_data_frame_to_sequence | Man page Source code |
| norm_based_on_proteomics_maxquant | Man page Source code |
| norm_maxquant | Man page Source code |
| normalize_nopair_ctrl_by_col | Man page Source code |
| normalize_nopair_noctrl_by_colmed | Man page Source code |
| normalize_phos_data_to_profiling | Man page |
| normalize_to_Pair | Man page Source code |
| plot_seqlogo | Man page Source code |
| pre_process_filter_psites | Man page Source code |
| qc_maxquant | Man page Source code |
| seach_motif_pattern | Man page Source code |
| visualization_deps_with_scatter | Man page Source code |
| visualization_fuzzycluster | Man page Source code |
| visualization_with_simple_pca | Man page Source code |
| visualization_with_simple_tsne | Man page Source code |
| visualization_with_umap | Man page Source code |
| write_csv_pep_seq_conf | Man page Source code |
