get_global_background_df: Get background data frame (fasta library from Refseq).

In ecnuzdd/PhosMap: A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data

Get background data frame (fasta library from Refseq).

Description

Get background data frame (fasta library from Refseq).

Usage

get_global_background_df(species = "human", fasta_type = "refseq")

Arguments

species	A string for that the alignment is based on which kinds of species, the options are human, mouse and rattus.
fasta_type,	A string for fasta source, the options are refseq and uniprot, the default is refseq

Value

A data frame of background

Author(s)

Dongdong Zhan and Mengsha Tong

Examples

## The process needs to load data from PhosMap datasets stored into FTP server.
## It may take a few minutes.
if(FALSE){
    background_df <- get_global_background_df(species = 'human', fasta_type = 'refseq')
    head(background_df)
}

ecnuzdd/PhosMap documentation built on Dec. 7, 2022, 4:09 a.m.