get_ksea_regulons_info: Get informational data frame by combining results from all...

In ecnuzdd/PhosMap: A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data

Get informational data frame by combining results from all experiments

Description

Get informational data frame by combining results from all experiments

Usage

get_ksea_regulons_info(
  ksea_regulons,
  ksea_trans_list,
  ksea_x_list,
  ptypes_data_ratio_colnames
)

Arguments

ksea_regulons	A kinase vector from all experiments.
ksea_trans_list	A list that consits of regulation direction of kinase from each experiment by ksea.
ksea_x_list	A list that consits of sepecific information from each experiment by ksea, like regulation direction, p value and activity etc..
ptypes_data_ratio_colnames	A vector that consists of column names from experiments.

Value

A data frame containing sepecific information of all experiments from ksea results, like regulation direction, pvalue and activity etc..

Author(s)

Dongdong Zhan and Mengsha Tong

Examples

## Not run: 
ftp_url <- "ftp://111.198.139.72:4000/pub/PhosMap_datasets/function_demo_data/get_ksea_regulons_info.RData"
load_data <- load_data_with_ftp(ftp_url, 'RData')
writeBin(load_data, "get_ksea_regulons_info.RData")
load("get_ksea_regulons_info.RData")

ksea_regulons_activity_df <- get_ksea_regulons_info(
  ksea_regulons,
  ksea_trans_list,
  ksea_activity_list,
  ptypes_data_ratio_colnames
)
ksea_regulons_activity_df

## End(Not run)

ecnuzdd/PhosMap documentation built on Dec. 7, 2022, 4:09 a.m.