merge_profiling_file_from_Firmiana: Merge profiling files downloaded from Firmiana.

In ecnuzdd/PhosMap: A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data

Merge profiling files downloaded from Firmiana.

Description

Filter data based on US (Unique and Ionscore > 20) peptide counts then merge profiling files.

Usage

merge_profiling_file_from_Firmiana(
  firmiana_gene_dir,
  US_cutoff = 1,
  experiment_gene_file_path
)

Arguments

firmiana_gene_dir	a folder containing gene identification results as input.
US_cutoff	a numerical value as a cutoff to filter data, the default is 1.
experiment_gene_file_path	a file path for storing experiemnt design of proteomics data.

Value

A merged data frame after filtering (US_cutoff) and replacing NAs to zeros.

Author(s)

Dongdong Zhan and Mengsha Tong

Examples

## Not run: 
merged_df <- merge_profiling_file_from_Firmiana(firmiana_gene_dir, US_cutoff = 1)

## End(Not run)

ecnuzdd/PhosMap documentation built on Dec. 7, 2022, 4:09 a.m.