generate_psites_score_file: Generate peptide identification files with psites scores.

In ecnuzdd/PhosMap: A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data

Generate peptide identification files with psites scores.

Description

Based on mascot txt files with psites and peptide identification files downloaded from Firmiana, the file with phosphorylation modifications is generated.

Usage

generate_psites_score_file(
  mascot_txt_dir,
  firmiana_peptide_dir,
  psites_score_dir
)

Arguments

mascot_txt_dir	A folder containing identification xml files with psites scores as input.
firmiana_peptide_dir	A folder containing identification txt files downloaded from Firmiana as input.
psites_score_dir	A folder used for saving files of peptide identification files with psites scores

Value

A series of output files saved in the psites_score_dir

Author(s)

Dongdong Zhan and Mengsha Tong

Examples

## Not run: 
generate_psites_score_file(mascot_txt_dir, firmiana_peptide_dir, psites_score_dir)

## End(Not run)

ecnuzdd/PhosMap documentation built on Dec. 7, 2022, 4:09 a.m.