TimiRGeN: Time sensitive microRNA-mRNA integration, analysis and network generation tool

TimiRGeN (Time Incorporated miR-mRNA Generation of Networks) is a novel R package which functionally analyses and integrates time course miRNA-mRNA differential expression data. This tool can generate small networks within R or export results into cytoscape or pathvisio for more detailed network construction and hypothesis generation. This tool is created for researchers that wish to dive deep into time series multi-omic datasets. TimiRGeN goes further than many other tools in terms of data reduction. Here, potentially hundreds of thousands of potential miRNA-mRNA interactions can be whittled down into a handful of high confidence miRNA-mRNA interactions effecting a signalling pathway, across a time course.

Package details

AuthorKrutik Patel [aut, cre]
Bioconductor views Clustering Network Pathways Software TimeCourse Visualization miRNA
MaintainerKrutik Patel <K.Patel5@newcastle.ac.uk>
URL https://github.com/Krutik6/TimiRGeN/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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TimiRGeN documentation built on April 17, 2021, 6:03 p.m.