TimiRGeN (Time Incorporated miR-mRNA Generation of Networks) is a novel R package which functionally analyses and integrates time course miRNA-mRNA differential expression data. This tool can generate small networks within R or export results into cytoscape or pathvisio for more detailed network construction and hypothesis generation. This tool is created for researchers that wish to dive deep into time series multi-omic datasets. TimiRGeN goes further than many other tools in terms of data reduction. Here, potentially hundreds of thousands of potential miRNA-mRNA interactions can be whittled down into a handful of high confidence miRNA-mRNA interactions effecting a signalling pathway, across a time course.
|Author||Krutik Patel [aut, cre]|
|Bioconductor views||Clustering Network Pathways Software TimeCourse Visualization miRNA|
|Maintainer||Krutik Patel <K.Patel5@newcastle.ac.uk>|
|Package repository||View on Bioconductor|
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