miRTarBase: miRTarBase dataset

In TimiRGeN: Time sensitive microRNA-mRNA integration, analysis and network generation tool

Description

miRTarBase dataset - downloaded from http://mirtarbase.cuhk.edu.cn/php/download.php on 7/03/21. miRNA-mRNA interactions labelled as "weak" have been removed.

Usage

data("miRTarBase")

Format

A data frame with 13315 observations on the following 9 variables.

miRTarBase.ID

Column of characters describing the ID of each miRNA-mRNA interaction.

miRNA

Column of characters describing the ID of each miRNA from an interaction.

Species..miRNA.

Column of characters describing the name of the species from each miRNA of an interaction.

Target.Gene

Column of characters describing the ID of each mRNA from an interaction.

Target.Gene..Entrez.ID.

Column of characters describing the entrezgene ID of each miRNA from an interaction.

Species..Target.Gene.

Column of characters describing the name of the species from each mRNA of an interaction.

Experiments

Column of characters describing the experiment used to capture each miNRA-mRNA interaction.

Support.Type

Column of characters describing the strength of each experiment.

References..PMID.

Column of characters describing the publication ID from each miRNA-mRNA interaction.

Source

http://mirtarbase.cuhk.edu.cn/php/download.php

References

Huang HY, Lin YC, Li J, Huang KY, Shrestha S, Hong HC, Tang Y, Chen YG, Jin CN, Yu Y, Xu JT, Li YM, Cai XX, Zhou ZY, Chen XH, Pei YY, Hu L, Su JJ, Cui SD, Wang F, Xie YY, Ding SY, Luo MF, Chou CH, Chang NW, Chen KW, Cheng YH, Wan XH, Hsu WL, Lee TY, Wei FX, Huang HD* "miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database" Nucleic Acids Research 2020 Jan 8;48(D1):D148-D154.

Examples

data(miRTarBase)

TimiRGeN documentation built on April 17, 2021, 6:03 p.m.