hs_probes: hs_probes

In TimiRGeN: Time sensitive microRNA-mRNA integration, analysis and network generation tool

Description

Gene names and ensemble genes IDs stored as characters. This is used as a demonstration in using a "user made" universe for overenrichment analysis. This is only used in section 3 of the vignette.

Usage

data("hs_probes")

Format

A data frame with 16801 observations on the following 2 variables.

external_gene_name

a character vector of gene names of probes.

ensembl_gene_id

a character vector of ensemble gene IDs of probes.

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL6884 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL8227

References

Camps C, Saini HK, Mole DR, Choudhry H et al. Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia. Mol Cancer 2014 Feb 11;13:28. PMID: 24517586

Examples

data(hs_probes)

TimiRGeN documentation built on April 17, 2021, 6:03 p.m.