mm_mRNA: Mouse microRNA data

Description Usage Format Source References Examples

Description

Mouse Fibrosis mRNA data from differential expression analysis. Folic Acid was injected into mouse kidneys to induce fibrosis and nephropathy. Measurements were taken prior to and 1, 2, 3, 7 and 14 days after injection. The 0 time point was contrasted over other time points. Data was put through limma for analysis. mm_mRNA only has DE results from 2000 mRNA genes for speed and size optimisation.

Column names are in the following format: timepoint(days).DEresult (Log2FC or adjPVal).

Usage

1
data("mm_mRNA")

Format

A data frame of mRNAs put through differential expression with 2000 observations in the following 10 variables.

D1.Log2FC

a numeric vector containing log2FC values of D1_fibrosis/ D0_fibrosis.

D1.adjPVal

a numeric vector containing adjusted P values of D1_fibrosis/ D0_fibrosis.

D2.Log2FC

a numeric vector containing log2FC values of D2_fibrosis/ D0_fibrosis.

D2.adjPVal

a numeric vector containing adjusted P values of D2_fibrosis/ D0_fibrosis.

D3.Log2FC

a numeric vector containing log2FC values of D3_fibrosis/ D0_fibrosis.

D3.adjPVal

a numeric vector containing adjusted P values of D3_fibrosis/ D0_fibrosis.

D7.Log2FC

a numeric vector containing log2FC values of D7_fibrosis/ D0_fibrosis.

D7.adjPVal

a numeric vector containing adjusted P values of D7_fibrosis/ D0_fibrosis.

D14.Log2FC

a numeric vector containing log2FC values of D14_fibrosis/ D0_fibrosis.

D14.adjPVal

a numeric vector containing adjusted P values of D14_fibrosis/ D0_fibrosis.

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE613287

References

M. Pavkovic, L. Pantano, C. V. Gerlach, S. Brutus, S. A. Boswell, R. A. Everley, J. V. Shah, S. H. Sui, and V. S. Vaidya, “Multi omics a nalysis of fibrotic kidneys in two mouse models,” Scientific data, vol. 6, no. 1, p. 92, 2019. <https://www.nature.com/articles/s41597-019-0095-5>

Examples

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data(mm_mRNA)
## maybe str(mm_mRNA) ; plot(mm_mRNA) ...

TimiRGeN documentation built on April 17, 2021, 6:03 p.m.