TDARACNE: Network reverse engineering from time course data.

To infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory. The proposed algorithm is expected to be useful in reconstruction of small biological directed networks from time course data.

AuthorZoppoli P.,Morganella S., Ceccarelli M.
Date of publicationNone
MaintainerZoppoli Pietro <zoppoli.pietro@gmail.com>
LicenseGPL-2
Version1.24.0

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Files

TDARACNE/.BBSoptions
TDARACNE/DESCRIPTION
TDARACNE/NAMESPACE
TDARACNE/R
TDARACNE/R/CalcMI_time2.R TDARACNE/R/DPI2_TDAracne.R TDARACNE/R/DPI_TDAracne.R TDARACNE/R/IcEfx.R TDARACNE/R/MItimeIcE2.R TDARACNE/R/MItimeThreshperm2.R TDARACNE/R/PercentileC.R TDARACNE/R/RangeRank2.R TDARACNE/R/TDARACNE.R TDARACNE/R/TDARACNEdataPublished.R TDARACNE/R/ToTheGraph_timeShiftmax2.R TDARACNE/R/bootstrap.R TDARACNE/R/plotRgraphviz.R TDARACNE/R/saveTime.R
TDARACNE/build
TDARACNE/build/vignette.rds
TDARACNE/data
TDARACNE/data/dataIRMAoff.rda
TDARACNE/data/dataIRMAon.rda
TDARACNE/data/dataSOSmean.rda
TDARACNE/data/dataYeast.rda
TDARACNE/data/threshIRMAon.rda
TDARACNE/data/threshSOSmean.rda
TDARACNE/data/threshYeast.rda
TDARACNE/inst
TDARACNE/inst/CITATION.txt
TDARACNE/inst/NEWS.txt
TDARACNE/inst/doc
TDARACNE/inst/doc/TDARACNE.R
TDARACNE/inst/doc/TDARACNE.Rnw
TDARACNE/inst/doc/TDARACNE.pdf
TDARACNE/man
TDARACNE/man/CalcMI_time2.Rd TDARACNE/man/DPI2_TDAracne.Rd TDARACNE/man/DPI_TDAracne.Rd TDARACNE/man/IcEfx.Rd TDARACNE/man/MItimeIcE2.Rd TDARACNE/man/MItimeThreshperm2.Rd TDARACNE/man/PercentileC.Rd TDARACNE/man/RangeRank2.Rd TDARACNE/man/TDARACNE.Rd TDARACNE/man/TDARACNEdataPublished.Rd TDARACNE/man/ToTheGraph_timeShiftmax2.Rd TDARACNE/man/bootstrap.Rd TDARACNE/man/dataIRMAoff.Rd TDARACNE/man/dataIRMAon.Rd TDARACNE/man/dataSOSmean.Rd TDARACNE/man/dataYeast.Rd TDARACNE/man/plotRgraphviz.Rd TDARACNE/man/saveTime.Rd TDARACNE/man/threshIRMAon.Rd TDARACNE/man/threshSOSmean.Rd TDARACNE/man/threshYeast.Rd
TDARACNE/vignettes
TDARACNE/vignettes/TDARACNE.Rnw
TDARACNE/vignettes/TDARACNE.bib

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