deltaGseg: deltaGseg

Identifying distinct subpopulations through multiscale time series analysis

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("deltaGseg")
AuthorDiana Low, Efthymios Motakis
Bioconductor views Clustering Proteomics TimeCourse Visualization
Date of publicationNone
MaintainerDiana Low <lowdiana@gmail.com>
LicenseGPL-2
Version1.16.0

View on Bioconductor

Man pages

chooseBreaks: Choose a given number of breakpoints in a set of...

chooseBreaks-methods: chooseBreaks

clusterPV: clusterPV

clusterPV-methods: clusterPV

clusterSegments: clusterSegments

clusterSegments-methods: clusterSegments

deltaGseg-package: deltaGseg

denoiseSegments: Wavelet denoising of trajectory series (segments)

denoiseSegments-methods: denoiseSegments

diagnosticPlots: diagnosticPlots

diagnosticPlots-methods: diagnosticPlots

getAVD: getAVD

getAVD-methods: 'getAVD'

getBreaks: getBreaks

getBreaks-methods: getBreaks

getIntervals: getIntervals

getIntervals-methods: getIntervals

getSegments: getSegments

getSegments-methods: getSegments

getTNames: getTNames

getTNames-methods: Retrieve filenames of trajectories

getTraj: getTraj

getTraj-methods: getTrajectories

parseTraj: Reads in files containing trajectory data

plotDiff: plotDiff

plotDiff-methods: plotDiff

plot-methods: Plot Trajectories-related objects

pvals: pvalues data

SegSeriesTrajectories-class: Class '"SegSeriesTrajectories"'

SegTrajectories-class: Class '"SegTrajectories"'

show-methods: ~~ Methods for Function 'show' ~~

simtraj: Sample trajectory series

simtraj.tr: Sample trajectory series

simtraj.tr2: Sample trajectory series

splitTraj: Identify Breakpoints in a Trajectory

splitTraj-methods: splitTraj

traj1: Sample trajectory series

traj1.denoise: Sample trajectory series

traj1.ss: Sample trajectory series

traj1.tr: Sample trajectory series

Trajectories-class: Class '"Trajectories"'

transformSeries: Transforms a Non-Stationary Series into a Weakly-Stationary...

transformSeries-methods: transformSeries

TransTrajectories-class: Class '"TransTrajectories"'

Functions

chooseBreaks Man page
chooseBreaks,list,numeric-method Man page
chooseBreaks-methods Man page
clusterPV Man page
clusterPV-methods Man page
clusterPV,SegTrajectories-method Man page
clusterSegments Man page
clusterSegments-methods Man page
clusterSegments,SegTrajectories-method Man page
deltaGseg Man page
denoiseSegments Man page
denoiseSegments-methods Man page
denoiseSegments,Trajectories-method Man page
denoiseSegments,TransTrajectories-method Man page
diagnosticPlots Man page
diagnosticPlots-methods Man page
diagnosticPlots,SegSeriesTrajectories-method Man page
getAVD Man page
getAVD-methods Man page
getAVD,Trajectories-method Man page
getAVD,TransTrajectories-method Man page
getBreaks Man page
getBreaks-methods Man page
getBreaks,TransTrajectories-method Man page
getIntervals Man page
getIntervals-methods Man page
getIntervals,SegSeriesTrajectories-method Man page
getSegments Man page
getSegments-methods Man page
getSegments,SegSeriesTrajectories-method Man page
getSegments,SegTrajectories-method Man page
getTNames Man page
getTNames-methods Man page
getTNames,Trajectories-method Man page
getTNames,TransTrajectories-method Man page
getTraj Man page
getTraj-methods Man page
getTraj,Trajectories-method Man page
getTraj,TransTrajectories-method Man page
parseTraj Man page
plot Man page
plotDiff Man page
plotDiff-methods Man page
plotDiff,TransTrajectories-method Man page
plot-methods Man page
plot,SegSeriesTrajectories-method Man page
plot,SegTrajectories-method Man page
plot,Trajectories-method Man page
plot,TransTrajectories-method Man page
pvals Man page
SegSeriesTrajectories-class Man page
SegTrajectories-class Man page
show-methods Man page
show,SegSeriesTrajectories-method Man page
show,SegTrajectories-method Man page
show,Trajectories-method Man page
show,TransTrajectories-method Man page
simtraj Man page
simtraj.tr Man page
simtraj.tr2 Man page
splitTraj Man page
splitTraj-methods Man page
splitTraj,Trajectories-method Man page
traj1 Man page
traj1.denoise Man page
traj1.ss Man page
traj1.tr Man page
Trajectories-class Man page
transformSeries Man page
transformSeries-methods Man page
transformSeries,Trajectories-method Man page
TransTrajectories-class Man page

Files

.BBSoptions
DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/AllGenerics.R R/helpers.R R/plot-methods.R R/pvclust-mods.R R/show-methods.R
build
build/vignette.rds
data
data/deltaGseg.rda
inst
inst/NEWS
inst/doc
inst/doc/deltaGseg.R
inst/doc/deltaGseg.Rnw
inst/doc/deltaGseg.pdf
inst/doc/diagplots.png
inst/doc/simclust.png
inst/doc/simtraj.png
inst/doc/simtrajtr.png
inst/doc/simtrajtr2.png
inst/doc/traj1.png
inst/doc/traj1break.png
inst/doc/traj1ss0.png
inst/doc/traj1ss1.png
inst/doc/traj1tr.png
inst/extdata
inst/extdata/D_GBTOT1
inst/extdata/D_GBTOT2
inst/extdata/D_GBTOT3
man
man/SegSeriesTrajectories-class.Rd man/SegTrajectories-class.Rd man/Trajectories-class.Rd man/TransTrajectories-class.Rd man/chooseBreaks-methods.Rd man/chooseBreaks.Rd man/clusterPV-methods.Rd man/clusterPV.Rd man/clusterSegments-methods.Rd man/clusterSegments.Rd man/deltaGseg-package.Rd man/denoiseSegments-methods.Rd man/denoiseSegments.Rd man/diagnosticPlots-methods.Rd man/diagnosticPlots.Rd man/getAVD-methods.Rd man/getAVD.Rd man/getBreaks-methods.Rd man/getBreaks.Rd man/getIntervals-methods.Rd man/getIntervals.Rd man/getSegments-methods.Rd man/getSegments.Rd man/getTNames-methods.Rd man/getTNames.Rd man/getTraj-methods.Rd man/getTraj.Rd man/parseTraj.Rd man/plot-methods.Rd man/plotDiff-methods.Rd man/plotDiff.Rd man/pvals.Rd man/show-methods.Rd man/simtraj.Rd man/simtraj.tr.Rd man/simtraj.tr2.Rd man/splitTraj-methods.Rd man/splitTraj.Rd man/traj1.Rd man/traj1.denoise.Rd man/traj1.ss.Rd man/traj1.tr.Rd man/transformSeries-methods.Rd man/transformSeries.Rd
vignettes
vignettes/deltaGseg.Rnw
vignettes/diagplots.png
vignettes/simclust.png
vignettes/simtraj.png
vignettes/simtrajtr.png
vignettes/simtrajtr2.png
vignettes/traj1.png
vignettes/traj1break.png
vignettes/traj1ss0.png
vignettes/traj1ss1.png
vignettes/traj1tr.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.