plethy: R framework for exploration and analysis of respirometry data

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

Author
Daniel Bottomly [aut, cre], Marty Ferris [ctb], Beth Wilmot [aut], Shannon McWeeney [aut]
Date of publication
None
Maintainer
Daniel Bottomly <bottomly@ohsu.edu>
License
GPL-3
Version
1.12.0
URLs

View on Bioconductor

Man pages

add_query_funcs
Builtin queries to add additional annotation to a BuxcoDB...
BuxcoDB
Class '"BuxcoDB"'
dbImport
Import data into a BuxcoDB database
parsing
Functions for parsing Buxco respirometry data
plethy
R framework for exploration and analysis of respirometry data
utilities
Utility functions to assist with QA/QC and analysis of...

Files in this package

plethy/DESCRIPTION
plethy/NAMESPACE
plethy/R
plethy/R/BuxcoDB.R
plethy/R/RetList.R
plethy/R/buxco_db_v2.R
plethy/R/dep_parser.R
plethy/R/utilities.R
plethy/README.md
plethy/build
plethy/build/vignette.rds
plethy/inst
plethy/inst/NEWS
plethy/inst/doc
plethy/inst/doc/plethy.R
plethy/inst/doc/plethy.Rnw
plethy/inst/doc/plethy.pdf
plethy/inst/extdata
plethy/inst/extdata/BuxcoR_sample.csv
plethy/inst/extdata/BuxcoR_sample.db
plethy/inst/extdata/plethy.template
plethy/inst/extdata/plethy.template/DESCRIPTION
plethy/inst/extdata/plethy.template/NAMESPACE
plethy/inst/extdata/plethy.template/R
plethy/inst/extdata/plethy.template/R/zzz.R
plethy/inst/extdata/plethy.template/man
plethy/inst/extdata/plethy.template/man/pkg.Rd
plethy/inst/unitTests
plethy/inst/unitTests/test_check_helpers.R
plethy/man
plethy/man/BuxcoDB.Rd
plethy/man/add_query_funcs.Rd
plethy/man/dbImport.Rd
plethy/man/parsing.Rd
plethy/man/plethy.Rd
plethy/man/utilities.Rd
plethy/tests
plethy/tests/runTests.R
plethy/vignettes
plethy/vignettes/plethy.Rnw