plethy: R framework for exploration and analysis of respirometry data
Version 1.14.0

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

AuthorDaniel Bottomly [aut, cre], Marty Ferris [ctb], Beth Wilmot [aut], Shannon McWeeney [aut]
Bioconductor views DataImport DataRepresentation Infastructure TimeCourse biocViews
Date of publicationNone
MaintainerDaniel Bottomly <bottomly@ohsu.edu>
LicenseGPL-3
Version1.14.0
URL https://github.com/dbottomly/plethy
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("plethy")

Getting started

README.md

Popular man pages

add_query_funcs: Builtin queries to add additional annotation to a BuxcoDB...
BuxcoDB: Class '"BuxcoDB"'
dbImport: Import data into a BuxcoDB database
parsing: Functions for parsing Buxco respirometry data
plethy: R framework for exploration and analysis of respirometry data
utilities: Utility functions to assist with QA/QC and analysis of...
See all...

All man pages Function index File listing

Man pages

add_query_funcs: Builtin queries to add additional annotation to a BuxcoDB...
BuxcoDB: Class '"BuxcoDB"'
dbImport: Import data into a BuxcoDB database
parsing: Functions for parsing Buxco respirometry data
plethy: R framework for exploration and analysis of respirometry data
utilities: Utility functions to assist with QA/QC and analysis of...

Functions

Files

DESCRIPTION
NAMESPACE
R
R/BuxcoDB.R
R/RetList.R
R/buxco_db_v2.R
R/dep_parser.R
R/utilities.R
README.md
build
build/vignette.rds
inst
inst/NEWS
inst/doc
inst/doc/plethy.R
inst/doc/plethy.Rnw
inst/doc/plethy.pdf
inst/extdata
inst/extdata/BuxcoR_sample.csv
inst/extdata/BuxcoR_sample.db
inst/extdata/plethy.template
inst/extdata/plethy.template/DESCRIPTION
inst/extdata/plethy.template/NAMESPACE
inst/extdata/plethy.template/R
inst/extdata/plethy.template/R/zzz.R
inst/extdata/plethy.template/man
inst/extdata/plethy.template/man/pkg.Rd
inst/unitTests
inst/unitTests/test_check_helpers.R
man
man/BuxcoDB.Rd
man/add_query_funcs.Rd
man/dbImport.Rd
man/parsing.Rd
man/plethy.Rd
man/utilities.Rd
tests
tests/runTests.R
vignettes
vignettes/plethy.Rnw
plethy documentation built on May 20, 2017, 9:38 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.