rain: Rhythmicity Analysis Incorporating Non-parametric Methods
Version 1.10.0

This package uses non-parametric methods to detect rhythms in time series. It deals with outliers, missing values and is optimized for time series comprising 10-100 measurements. As it does not assume expect any distinct waveform it is optimal or detecting oscillating behavior (e.g. circadian or cell cycle) in e.g. genome- or proteome-wide biological measurements such as: micro arrays, proteome mass spectrometry, or metabolome measurements.

Browse man pages Browse package API and functions Browse package files

AuthorPaul F. Thaben, Pål O. Westermark
Bioconductor views Genetics Microarray MultipleComparison Proteomics SystemsBiology TimeCourse
Date of publicationNone
MaintainerPaul F. Thaben <paul.thaben@charite.de>
LicenseGPL-2
Version1.10.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("rain")

Man pages

menetRNASeqMouseLiver: Time courses of gene expression in mouse liver
rain: Detection of rhythmic behavior in time series.
rain-package: Rythmicity Analysis incooperating Non-parametric Methods

Functions

calcUmbrellaM Source code
foldarr Source code
generateCode Source code
harding Source code
lcomp Source code
manWilcox Source code
manWilcoxMatrix Source code
menetRNASeqMouseLiver Man page
rain Man page Source code
rain-package Man page
reduceByNA Source code
umbrellaCirc Source code

Files

DESCRIPTION
NAMESPACE
R
R/calcStatistic.R
R/mainFunction.R
R/mouseLiverData.R
R/p.est.R
R/rain-package.R
R/umbCirc.R
build
build/vignette.rds
data
data/menetRNASeqMouseLiver.rda
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/rain.R
inst/doc/rain.Rnw
inst/doc/rain.pdf
man
man/menetRNASeqMouseLiver.Rd
man/rain-package.Rd
man/rain.Rd
vignettes
vignettes/rain.Rnw
rain documentation built on May 20, 2017, 10:32 p.m.