menetRNASeqMouseLiver: Time courses of gene expression in mouse liver
In rain: Rhythmicity Analysis Incorporating Non-parametric Methods
Description
Usage
Format
Author(s)
References
Description
Temporal gene expression profiling in mouse liver, measured by
high throughput sequencing. Profiles shows the changes in gene expression
in mice under 12 h light: 12 h dark conditions. Data were originally
published by Menet et.
al. (2012) under Creative Commons License 3.0:
http://creativecommons.org/licenses/by/3.0/. The data are available
in the public domain at GEO http://www.ncbi.nlm.nih.gov/geo/ as
Dataset entry GSE36916.
Usage
1
Format
a data.frame containing the normalized expression values for
each gene and time point in two repeats. First number shows the time of
measurement in 'Zeitgeber Time' (ZT) whereas ZT_0 is the time of light on.
The second number specifies the biological replicate.
Author(s)
Paul F. Thaben paul.thaben@charite.de
References
Menet, J. S., Rodriguez, J., Abruzzi, K. C., & Rosbash, M.
(2012). Nascent-Seq reveals novel features of mouse circadian
transcriptional regulation. eLife, 1(0), e00011.
doi:10.7554/eLife.00011
rain documentation built on Nov. 8, 2020, 6:56 p.m.
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Description Usage Format Author(s) References
Description
Temporal gene expression profiling in mouse liver, measured by high throughput sequencing. Profiles shows the changes in gene expression in mice under 12 h light: 12 h dark conditions. Data were originally published by Menet et. al. (2012) under Creative Commons License 3.0: http://creativecommons.org/licenses/by/3.0/. The data are available in the public domain at GEO http://www.ncbi.nlm.nih.gov/geo/ as Dataset entry GSE36916.
Usage
1 |
Format
a data.frame containing the normalized expression values for
each gene and time point in two repeats. First number shows the time of
measurement in 'Zeitgeber Time' (ZT) whereas ZT_0 is the time of light on.
The second number specifies the biological replicate.
Author(s)
Paul F. Thaben paul.thaben@charite.de
References
Menet, J. S., Rodriguez, J., Abruzzi, K. C., & Rosbash, M. (2012). Nascent-Seq reveals novel features of mouse circadian transcriptional regulation. eLife, 1(0), e00011. doi:10.7554/eLife.00011
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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