EventPointer: An effective identification of alternative splicing events using junction arrays and RNA-Seq data

EventPointer is an R package to identify alternative splicing events that involve either simple (case-control experiment) or complex experimental designs such as time course experiments and studies including paired-samples. The algorithm can be used to analyze data from either junction arrays (Affymetrix Arrays) or sequencing data (RNA-Seq). The software returns a data.frame with the detected alternative splicing events: gene name, type of event (cassette, alternative 3',...,etc), genomic position, statistical significance and increment of the percent spliced in (Delta PSI) for all the events. The algorithm can generate a series of files to visualize the detected alternative splicing events in IGV. This eases the interpretation of results and the design of primers for standard PCR validation.

Package details

AuthorJuan Pablo Romero, Juan Ferrer-Bonsoms, Ander Muniategui, Fernando Carazo, Ander Aramburu, Angel Rubio
Bioconductor views AlternativeSplicing DifferentialSplicing ImmunoOncology RNASeq Sequencing TimeCourse Transcription mRNAMicroarray
MaintainerJuan Pablo Romero <[email protected]>
LicenseArtistic-2.0
Version2.0.1
URL https://github.com/jpromeror/EventPointer
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("EventPointer")

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EventPointer documentation built on Dec. 6, 2018, 6:01 p.m.