getbootstrapkallisto: GetbootstrapKallisto

In EventPointer: An effective identification of alternative splicing events using junction arrays and RNA-Seq data

Description

Function to load the values of the bootstrap returned by kallisto pipeline

Inputs:

Usage

getbootstrapkallisto(pathValues = NA, nb)

Arguments

pathValues	A vector with the complete directory to the folder of the output of kallisto
nb	number of bootstrap

Value

A list containing the quantification data and with the bootrap information.

Examples

   PathFiles <- system.file('extdata',package='EventPointer')
   PathFiles <- dir(paste0(PathFiles,'/output'),full.names = TRUE)

   #load the data

   mydatab <- getbootstrapkallisto(pathValues = PathFiles,nb = 20)

EventPointer documentation built on Nov. 8, 2020, 7:12 p.m.