EventDetectionMultipath: Detect splicing multipath events using EventPointer...

Description Usage Arguments Value Examples

View source: R/EventDetectionMultipath.R

Description

Identification of all the multipath alternative splicing events in the splicing graphs

Usage

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EventDetectionMultipath(Input, cores, Path, paths = 2)

Arguments

Input

Output of the PrepareBam_EP function

cores

Number of cores used for parallel processing

Path

Directory where to write the EventsFound_RNASeq.txt file

paths

Maximum number of paths of the events to find.

Value

list with all the events found for all the genes present in the experiment. It also generates a file called EventsFound_RNASeq.txt with the information each event.

Examples

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  # Run EventDetection function
   data(SG_RNASeq)
   TxtPath<-tempdir()
   AllEvents_RNASeq_MP<-EventDetectionMultipath(SG_RNASeq,cores=1,Path=TxtPath,paths=3)

EventPointer documentation built on Nov. 8, 2020, 7:12 p.m.