EventDetectionMultipath: Detect splicing multipath events using EventPointer...

In EventPointer: An effective identification of alternative splicing events using junction arrays and RNA-Seq data

Description

Identification of all the multipath alternative splicing events in the splicing graphs

Usage

EventDetectionMultipath(Input, cores, Path, paths = 2)

Arguments

Input	Output of the PrepareBam_EP function
cores	Number of cores used for parallel processing
Path	Directory where to write the EventsFound_RNASeq.txt file
paths	Maximum number of paths of the events to find.

Value

list with all the events found for all the genes present in the experiment. It also generates a file called EventsFound_RNASeq.txt with the information each event.

Examples

  # Run EventDetection function
   data(SG_RNASeq)
   TxtPath<-tempdir()
   AllEvents_RNASeq_MP<-EventDetectionMultipath(SG_RNASeq,cores=1,Path=TxtPath,paths=3)

EventPointer documentation built on Nov. 8, 2020, 7:12 p.m.