Krutik6/TimiRGeN: Time sensitive microRNA-mRNA integration, analysis and network generation tool

TimiRGeN (Time Incorporated miR-mRNA Generation of Networks) is a novel R package which functionally analyses and integrates time course miRNA-mRNA differential expression data. This tool can generate small networks within R or export results into cytoscape or pathvisio for more detailed network construction and hypothesis generation. This tool is created for researchers that wish to dive deep into time series multi-omic datasets. TimiRGeN goes further than many other tools in terms of data reduction. Here, potentially hundreds-of-thousands of potential miRNA-mRNA interactions can be whittled down into a handful of high confidence miRNA-mRNA interactions affecting a signalling pathway, across a time course.

Getting started

Package details

Bioconductor views Clustering Network Pathways Software TimeCourse Visualization miRNA
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Krutik6/TimiRGeN documentation built on April 13, 2022, 1:12 a.m.