mm_mRNA: Mouse microRNA data
In Krutik6/TimiRGeN: Time sensitive microRNA-mRNA integration, analysis and network generation tool
mm_mRNA R Documentation
Mouse microRNA data
Description
Mouse Fibrosis mRNA data from differential expression analysis.
Folic Acid was injected into mouse kidneys to induce fibrosis and
nephropathy. Measurements were taken prior to and 1, 2, 3, 7 and 14
days after injection. The 0 time point was contrasted over other time points.
Data was put through limma for analysis. mm_mRNA only has DE results from 2000
mRNA genes for speed and size optimisation.
Column names are in the following format: timepoint(days).DEresult (Log2FC or
adjPVal).
Usage
data("mm_mRNA")
Format
A data frame of mRNAs put through differential expression with 2000 observations
in the following 10 variables.
D1.Log2FCa numeric vector containing log2FC values of
D1_fibrosis/ D0_fibrosis.
D1.adjPVala numeric vector containing adjusted P values of
D1_fibrosis/ D0_fibrosis.
D2.Log2FCa numeric vector containing log2FC values of
D2_fibrosis/ D0_fibrosis.
D2.adjPVala numeric vector containing adjusted P values of
D2_fibrosis/ D0_fibrosis.
D3.Log2FCa numeric vector containing log2FC values of
D3_fibrosis/ D0_fibrosis.
D3.adjPVala numeric vector containing adjusted P values of
D3_fibrosis/ D0_fibrosis.
D7.Log2FCa numeric vector containing log2FC values of
D7_fibrosis/ D0_fibrosis.
D7.adjPVala numeric vector containing adjusted P values of
D7_fibrosis/ D0_fibrosis.
D14.Log2FCa numeric vector containing log2FC values of
D14_fibrosis/ D0_fibrosis.
D14.adjPVala numeric vector containing adjusted P values of
D14_fibrosis/ D0_fibrosis.
Source
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE613287
References
M. Pavkovic, L. Pantano, C. V. Gerlach, S. Brutus, S. A. Boswell,
R. A. Everley, J. V. Shah, S. H. Sui, and V. S. Vaidya, “Multi omics a
nalysis of fibrotic kidneys in two mouse models,” Scientific data, vol. 6,
no. 1, p. 92, 2019. <https://www.nature.com/articles/s41597-019-0095-5>
Examples
data(mm_mRNA)
## maybe str(mm_mRNA) ; plot(mm_mRNA) ...
Krutik6/TimiRGeN documentation built on Jan. 27, 2024, 7:46 p.m.
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| mm_mRNA | R Documentation |
Mouse microRNA data
Description
Mouse Fibrosis mRNA data from differential expression analysis. Folic Acid was injected into mouse kidneys to induce fibrosis and nephropathy. Measurements were taken prior to and 1, 2, 3, 7 and 14 days after injection. The 0 time point was contrasted over other time points. Data was put through limma for analysis. mm_mRNA only has DE results from 2000 mRNA genes for speed and size optimisation.
Column names are in the following format: timepoint(days).DEresult (Log2FC or adjPVal).
Usage
data("mm_mRNA")Format
A data frame of mRNAs put through differential expression with 2000 observations in the following 10 variables.
D1.Log2FCa numeric vector containing log2FC values of D1_fibrosis/ D0_fibrosis.
D1.adjPVala numeric vector containing adjusted P values of D1_fibrosis/ D0_fibrosis.
D2.Log2FCa numeric vector containing log2FC values of D2_fibrosis/ D0_fibrosis.
D2.adjPVala numeric vector containing adjusted P values of D2_fibrosis/ D0_fibrosis.
D3.Log2FCa numeric vector containing log2FC values of D3_fibrosis/ D0_fibrosis.
D3.adjPVala numeric vector containing adjusted P values of D3_fibrosis/ D0_fibrosis.
D7.Log2FCa numeric vector containing log2FC values of D7_fibrosis/ D0_fibrosis.
D7.adjPVala numeric vector containing adjusted P values of D7_fibrosis/ D0_fibrosis.
D14.Log2FCa numeric vector containing log2FC values of D14_fibrosis/ D0_fibrosis.
D14.adjPVala numeric vector containing adjusted P values of D14_fibrosis/ D0_fibrosis.
Source
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE613287
References
M. Pavkovic, L. Pantano, C. V. Gerlach, S. Brutus, S. A. Boswell, R. A. Everley, J. V. Shah, S. H. Sui, and V. S. Vaidya, “Multi omics a nalysis of fibrotic kidneys in two mouse models,” Scientific data, vol. 6, no. 1, p. 92, 2019. <https://www.nature.com/articles/s41597-019-0095-5>
Examples
data(mm_mRNA)
## maybe str(mm_mRNA) ; plot(mm_mRNA) ...
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