Files in Krutik6/TimiRGeN

Time sensitive microRNA-mRNA integration, analysis and network generation tool

DESCRIPTION

NAMESPACE

NEWS

R/addIds.R R/addPrefix.R R/clustPrep.R R/clusterCheck.R R/clusterList.R R/combineGenes.R R/corrTable.R R/createClusters.R R/createClusters2.R R/cytoMake.R R/dataMiningMatrix.R R/diffExpressRes.R R/dloadGmt.R R/dloadMirdb.R R/dloadMirtarbase.R R/dloadTargetscan.R R/eNames.R R/enrichWiki.R R/genesList.R R/getIdsMir.R R/getIdsMrna.R R/getP.R R/gmtEnsembl.R R/hClustPrep.R R/linearRegr.R R/makeDynamic.R R/makeMapp.R R/makeNet.R R/matrixFilter.R R/micrornaFull.R R/mirMrnaInt.R R/multiReg.R R/nonUnique.R R/pickPair.R R/quickBar.R R/quickCrossCorr.R R/quickDMap.R R/quickDendro.R R/quickFuzz.R R/quickHClust.R R/quickMap.R R/quickNet.R R/quickPathwayTC.R R/quickReg.R R/quickTC.R R/quickTCPred.R R/reduceWiki.R R/returnCluster.R R/savePlots.R R/significantVals.R R/startObject.R R/turnPercent.R R/wikiList.R R/wikiMatrix.R R/wikiMrna.R README.md

data/UUO_data.rda

data/e_list_mouse.rda

data/hs_mRNA.rda

data/hs_miR.rda

data/hs_probes.rda

data/long_data.rda

data/miRTarBase.rda

data/mm_mRNA.rda

data/mm_miR.rda

data/w_list_mouse.rda

inst/Author

inst/CITATION

inst/extdata/Int_data.rda

inst/extdata/clusterdata.rda

inst/extdata/clusters.rda

inst/extdata/hs_gmt.rda

inst/extdata/mfuzzdata.rda

inst/extdata/mm_gmt.rda

inst/extdata/w_list_human.rda

man/UUO_data.Rd man/addIds.Rd man/addPrefix.Rd man/clusterCheck.Rd man/clusterList.Rd man/combineGenes.Rd man/createClusters.Rd man/createClusters2.Rd man/cytoMake.Rd man/dataMiningMatrix.Rd man/diffExpressRes.Rd man/dloadGmt.Rd man/dloadMirdb.Rd man/dloadMirtarbase.Rd man/dloadTargetscan.Rd man/eNames.Rd man/e_list_mouse.Rd man/enrichWiki.Rd man/genesList.Rd man/getIdsMir.Rd man/getIdsMrna.Rd man/gmtEnsembl.Rd man/hs_mRNA.Rd man/hs_miR.Rd man/hs_probes.Rd man/linearRegr.Rd man/long_data.Rd man/makeDynamic.Rd man/makeMapp.Rd man/makeNet.Rd man/matrixFilter.Rd man/miRTarBase.Rd man/mirMrnaInt.Rd man/mm_mRNA.Rd man/mm_miR.Rd man/multiReg.Rd man/quickBar.Rd man/quickCrossCorr.Rd man/quickDMap.Rd man/quickDendro.Rd man/quickFuzz.Rd man/quickHClust.Rd man/quickMap.Rd man/quickNet.Rd man/quickPathwayTC.Rd man/quickReg.Rd man/quickTC.Rd man/quickTCPred.Rd man/reduceWiki.Rd man/returnCluster.Rd man/savePlots.Rd man/significantVals.Rd man/startObject.Rd man/turnPercent.Rd man/w_list_mouse.Rd man/wikiList.Rd man/wikiMatrix.Rd man/wikiMrna.Rd tests/testthat.R

tests/testthat/Clusters.rds

tests/testthat/EnrichWiki.rds

tests/testthat/GenesofInterest.rds

tests/testthat/IDs_mouse_mRNA.rds

tests/testthat/IDs_mouse_miR.rds

tests/testthat/MAE_Prefix.rds

tests/testthat/MAE_mm.rds

tests/testthat/MiningMatrix.rds

tests/testthat/TargetScans_results.rds

tests/testthat/corrmat.rds

tests/testthat/filt_df.rds

tests/testthat/filtered_genelist_c.rds

tests/testthat/filtered_genelist_s.rds

tests/testthat/gene_entrez_c.rds

tests/testthat/genelist_s.rds

tests/testthat/geneslist_c.rds

tests/testthat/genetic_data.rds

tests/testthat/interactions.rds

tests/testthat/log2fc.rds

tests/testthat/miRDB_resuts.rds

tests/testthat/miRTarBase_results.rds

tests/testthat/net.rds

tests/testthat/test_addIds_c.R tests/testthat/test_addIds_s.R tests/testthat/test_addPrefix.R tests/testthat/test_combineGenes.R tests/testthat/test_dataMiningMatrix.R tests/testthat/test_diffExpressRes.R tests/testthat/test_eNames_c.R tests/testthat/test_eNames_s.R tests/testthat/test_genesList_c.R tests/testthat/test_genesList_s.R tests/testthat/test_getIdsMir.R tests/testthat/test_gmtEnsembl.R tests/testthat/test_hs_data.R tests/testthat/test_interactions_df.R tests/testthat/test_matrixFilter.R tests/testthat/test_mirMrnaInt.R tests/testthat/test_mm_data.R tests/testthat/test_quickBar.R tests/testthat/test_quickFuzz.R tests/testthat/test_quickNet.R tests/testthat/test_reduceWiki.R tests/testthat/test_significantVals_c.R tests/testthat/test_significantVals_s.R tests/testthat/test_startObject.R tests/testthat/test_turnPercent.R tests/testthat/test_wikiMatrix.R tests/testthat/test_wikiMrna.R

tests/testthat/wikimatrix.rds

tests/testthat/wpdata.rds

vignettes/D14_wikipathways.png

vignettes/D1_wikipathways.png

vignettes/D2_wikipathways.png

vignettes/D3_wikipathways.png

vignettes/D7_wikipathways.png

vignettes/Fuzz.jpeg

vignettes/NetPlot.jpeg

vignettes/TimiRGeN_tutorial.Rmd

vignettes/ccplot.png

vignettes/corplot.png

vignettes/dendro.jpeg

vignettes/net2.jpeg

vignettes/pathplot.png

vignettes/predred.png

vignettes/reg1.png

vignettes/reg2.png

Krutik6/TimiRGeN documentation built on Jan. 27, 2024, 7:46 p.m.