mm_miR: Mouse microRNA data
In Krutik6/TimiRGeN: Time sensitive microRNA-mRNA integration, analysis and network generation tool
mm_miR R Documentation
Mouse microRNA data
Description
Mouse Fibrosis microRNA data from differential expression analysis.
Folic Acid was injected into mouse kidneys to induce fibrosis and
nephropathy. Measurements were taken prior to (0 days) and 1, 2, 3, 7 and 14
after injection. The 0 time point was contrasted over other time
points. Data was put through limma for analysis. mm_miR consists of DE results
from 278 mouse miRs.
The miR names are using TimiRGeN friendly nomenclature. This data is an example
of how miR names should be named before input into TimiRGeN.
Column names are in the following format: timepoint(days).DEresult (Log2FC or
adjPVal).
Usage
data("mm_miR")
Format
A data frame of miRNAs put through differential expression with 278 observations
in the following 10 variables.
D1.Log2FCa numeric vector containing log2FC values of
D1_fibrosis/ D0_fibrosis.
D1.adjPVala numeric vector containing adjusted P values of
D1_fibrosis/ D0_fibrosis.
D2.Log2FCa numeric vector containing log2FC values of
D2_fibrosis/ D0_fibrosis.
D2.adjPVala numeric vector containing adjusted P values of
D2_fibrosis/ D0_fibrosis.
D3.Log2FCa numeric vector containing log2FC values of
D3_fibrosis/ D0_fibrosis.
D3.adjPVala numeric vector containing adjusted P values of
D3_fibrosis/ D0_fibrosis.
D7.Log2FCa numeric vector containing log2FC values of
D7_fibrosis/ D0_fibrosis.
D7.adjPVala numeric vector containing adjusted P values of
D7_fibrosis/ D0_fibrosis.
D14.Log2FCa numeric vector containing log2FC values of
D14_fibrosis/ D0_fibrosis.
D14.adjPVala numeric vector containing adjusted P values of
D14_fibrosis/ D0_fibrosis.
Source
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE613287
References
M. Pavkovic, L. Pantano, C. V. Gerlach, S. Brutus, S. A. Boswell,
R. A. Everley, J. V. Shah, S. H. Sui, and V. S. Vaidya, “Multi omics a
nalysis of fibrotic kidneys in two mouse models,” Scientific data, vol. 6,
no. 1, p. 92, 2019. <https://www.nature.com/articles/s41597-019-0095-5>
Examples
data(mm_miR)
## maybe str(mm_miR) ; plot(mm_miR) ...
Krutik6/TimiRGeN documentation built on Jan. 27, 2024, 7:46 p.m.
R Package Documentation
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| mm_miR | R Documentation |
Mouse microRNA data
Description
Mouse Fibrosis microRNA data from differential expression analysis. Folic Acid was injected into mouse kidneys to induce fibrosis and nephropathy. Measurements were taken prior to (0 days) and 1, 2, 3, 7 and 14 after injection. The 0 time point was contrasted over other time points. Data was put through limma for analysis. mm_miR consists of DE results from 278 mouse miRs.
The miR names are using TimiRGeN friendly nomenclature. This data is an example of how miR names should be named before input into TimiRGeN.
Column names are in the following format: timepoint(days).DEresult (Log2FC or adjPVal).
Usage
data("mm_miR")Format
A data frame of miRNAs put through differential expression with 278 observations in the following 10 variables.
D1.Log2FCa numeric vector containing log2FC values of D1_fibrosis/ D0_fibrosis.
D1.adjPVala numeric vector containing adjusted P values of D1_fibrosis/ D0_fibrosis.
D2.Log2FCa numeric vector containing log2FC values of D2_fibrosis/ D0_fibrosis.
D2.adjPVala numeric vector containing adjusted P values of D2_fibrosis/ D0_fibrosis.
D3.Log2FCa numeric vector containing log2FC values of D3_fibrosis/ D0_fibrosis.
D3.adjPVala numeric vector containing adjusted P values of D3_fibrosis/ D0_fibrosis.
D7.Log2FCa numeric vector containing log2FC values of D7_fibrosis/ D0_fibrosis.
D7.adjPVala numeric vector containing adjusted P values of D7_fibrosis/ D0_fibrosis.
D14.Log2FCa numeric vector containing log2FC values of D14_fibrosis/ D0_fibrosis.
D14.adjPVala numeric vector containing adjusted P values of D14_fibrosis/ D0_fibrosis.
Source
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE613287
References
M. Pavkovic, L. Pantano, C. V. Gerlach, S. Brutus, S. A. Boswell, R. A. Everley, J. V. Shah, S. H. Sui, and V. S. Vaidya, “Multi omics a nalysis of fibrotic kidneys in two mouse models,” Scientific data, vol. 6, no. 1, p. 92, 2019. <https://www.nature.com/articles/s41597-019-0095-5>
Examples
data(mm_miR)
## maybe str(mm_miR) ; plot(mm_miR) ...
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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