w_list_mouse: Wikipathways lists for mouse produced by the wikiList...
In Krutik6/TimiRGeN: Time sensitive microRNA-mRNA integration, analysis and network generation tool
w_list_mouse R Documentation
Wikipathways lists for mouse produced by the wikiList function.
Description
List of entrezIDs associated with each wikipathway made for mouse. This dataset
will allow for functions to run faster during CMD check and vignette building.
This is used instead of the wikiList function in several instances in TimiRGeN
because the wikiList takes a lot of time to download data. For example in the
vignette and in several function examples. To reproduce the output enter the
following code.
>MAE <- MultiAssayExperiment
>MAE2 <- wikiList(MAE, stringSpecies = 'Mus musculus', stringSymbol = 'L')
Usage
data("w_list_mouse")
Format
List of every mouse wikipathway. Each wikipathway will have associated genes
stored as entrezIDs.
Details
A Large list of each wikipathway and associated enterzgene IDs.
Source
https://www.wikipathways.org/index.php/Download_Pathways
References
Denise N Slenter et al. “WikiPathways: a multifaceted pathway database b
ridging metabolomics to other omics research”.
In: Nucleic acids research 46.D1 (2017), pp. D661–D667.
Examples
data(w_list_mouse) -> w_list_mouse
Krutik6/TimiRGeN documentation built on Jan. 27, 2024, 7:46 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| w_list_mouse | R Documentation |
Wikipathways lists for mouse produced by the wikiList function.
Description
List of entrezIDs associated with each wikipathway made for mouse. This dataset will allow for functions to run faster during CMD check and vignette building. This is used instead of the wikiList function in several instances in TimiRGeN because the wikiList takes a lot of time to download data. For example in the vignette and in several function examples. To reproduce the output enter the following code. >MAE <- MultiAssayExperiment >MAE2 <- wikiList(MAE, stringSpecies = 'Mus musculus', stringSymbol = 'L')
Usage
data("w_list_mouse")Format
List of every mouse wikipathway. Each wikipathway will have associated genes stored as entrezIDs.
Details
A Large list of each wikipathway and associated enterzgene IDs.
Source
https://www.wikipathways.org/index.php/Download_Pathways
References
Denise N Slenter et al. “WikiPathways: a multifaceted pathway database b ridging metabolomics to other omics research”. In: Nucleic acids research 46.D1 (2017), pp. D661–D667.
Examples
data(w_list_mouse) -> w_list_mouse
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.