The EBSeqHMM package implements an auto-regressive hidden Markov model for statistical analysis in ordered RNA-seq experiments (e.g. time course or spatial course data). The EBSeqHMM package provides functions to identify genes and isoforms that have non-constant expression profile over the time points/positions, and cluster them into expression paths.
|Author||Ning Leng, Christina Kendziorski|
|Bioconductor views||Bayesian DifferentialExpression GeneExpression HiddenMarkovModel MultipleComparison RNASeq Sequencing StatisticalMethod TimeCourse|
|Maintainer||Ning Leng <[email protected]>|
|Package repository||View on Bioconductor|
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