f0: Calculate the prior predictive distribution of the...

In EBSeqHMM: Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments

Description

Calculate the prior predictive distribution of the Beta-Negative Binomial model

Usage

f0(Input, AlphaIn, BetaIn, EmpiricalR, NumOfGroups, log)

Arguments

Input	expression values
AlphaIn,BetaIn,EmpiricalR	The parameters estimated from last iteration of EM.
NumOfGroups	How many transcripts within each Ng group
log	If set as TRUE, the output will in log scale.

Details

Function f0() will calculate the Beta-Negative Binomial prior predictive probability for a given set of parameters

Value

output a numeric vector, each element shows the prior predictive probability of one gene/isoform

Author(s)

Ning Leng

Examples

f0(matrix(rnorm(100,100,1),ncol=10), .5, .6,
           matrix(rnorm(100,200,1),ncol=10), 100, TRUE)

EBSeqHMM documentation built on Nov. 8, 2020, 5:22 p.m.