Man pages for EBSeqHMM
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments
| beta.mom | Method of moments estimation ( beta distribution ) |
| EBHMMNBfun | Baum-Welch algorithm for a single hidden markov chain |
| EBHMMNBfunForMulti | Baum-Welch algorithm for multiple hidden markov chains |
| EBHMMNBMultiEM_2chain | Run EBSeqHMM model with a fixed expected FC |
| EBSeqHMM-package | EBSeqHMM: A Bayesian approach for identifying gene-expression... |
| EBSeqHMMTest | Identify DE genes and classify them into their most likely... |
| EBTest_ext | Extented EBTest function |
| f0 | Calculate the prior predictive distribution of the... |
| GeneExampleData | Simulated gene level data set with 5 ordered conditions |
| GetAllPaths | Obtain all possible gene paths for an RNA-seq experiments... |
| GetConfidentCalls | Obtain confident gene calls for classifying genes into... |
| GetDECalls | Obtain DE gene/isoform list at a certain FDR |
| IsoExampleList | Simulated isoform level data set with 5 ordered conditions |
| LikefunNBHMM | Likelihood function of the Beta-Negative Binomial HMM Model |
| PlotExp | Plot expression of a single gene |
