Biocview "HiddenMarkovModel"

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

An R package for prediction of nucleosome positions

Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments

Bayesian Hidden Markov Model for the detection of differentially methylated regions

Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data

Computational pipeline for computing probability of modification from structure probing experiment data

Cut rDNA Sequences Into Domains Using Covariance Models

Differentially Methylated CpG using Hidden Markov Model

Epigenomic R-based analysis with hidden Markov models

Error correction tool for noisy genotyping by sequencing (GBS) data

Generation of null ranges via bootstrapping or covariate matching

Genotyping and QTL Mapping in DO Mice

Hidden Factor Graph Models

HMM-Based Model for Genotyping and Cross-Over Identification

Identification and classification of plant transcription factors

Imputation-guided re-construction of complete methylomes from WGBS data

Infer Copy Number Variation from Single-Cell RNA-Seq Data

Inference of Chromosome-length Haplotypes using Genomic Data of Single Gamete Cells

Inference of Chromosome-Length Haplotypes Using Genomic Data of Single Gamete Cells

Integrated Copy Number Variation detection

Interface to Call Programs from Infernal RNA Covariance Model Package

Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections

Subclonal copy number and LOH prediction from whole genome sequencing of tumours

The Genomic STate ANnotation Package