plbaldoni/epigraHMM: Epigenomic R-based analysis with hidden Markov models

epigraHMM provides a set of tools for the analysis of epigenomic data based on hidden Markov Models. It contains two separate peak callers, one for consensus peaks from biological or technical replicates, and one for differential peaks from multi-replicate multi-condition experiments. In differential peak calling, epigraHMM provides window-specific posterior probabilities associated with every possible combinatorial pattern of read enrichment across conditions.

Getting started

Package details

Bioconductor views ATACSeq ChIPSeq DNaseSeq Epigenetics HiddenMarkovModel
LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
plbaldoni/epigraHMM documentation built on Jan. 17, 2022, 6:45 a.m.