ATLi2001/titancna: Subclonal copy number and LOH prediction from whole genome sequencing of tumours

Hidden Markov model to segment and predict regions of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH), and estimate cellular prevalenece of clonal clusters in tumour whole genome sequencing data.

Getting started

Package details

AuthorGavin Ha, Sohrab P Shah
Bioconductor views CopyNumberVariation DNASeq ExomeSeq Genetics GenomicVariation HiddenMarkovModel Sequencing StatisticalMethod WholeGenome
MaintainerGavin Ha <>, Sohrab P Shah <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
ATLi2001/titancna documentation built on May 17, 2019, 10:16 a.m.