almeidasilvaf/tfhunter: Identification and classification of plant transcription factors

planttfhunter is used to identify plant transcription factors (TFs) from protein sequence data and classify them into families and subfamilies using the classification scheme implemented in PlantTFDB. TFs are identified using pre-built hidden Markov model profiles for DNA-binding domains. Then, auxiliary and forbidden domains are used with DNA-binding domains to classify TFs into families and subfamilies (when applicable). Currently, TFs can be classified in 58 different TF families/subfamilies.

Getting started

Package details

Bioconductor views Classification FunctionalGenomics FunctionalPrediction GenomeAnnotation HiddenMarkovModel Sequencing Software Transcription
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
almeidasilvaf/tfhunter documentation built on March 19, 2023, 8:53 p.m.