almeidasilvaf/tfhunter: Identification and classification of plant transcription factors

tfhunter is used to identify plant transcription factors (TFs) from protein sequence data and classify them into families and subfamilies. TFs are identified and classified using profile hidden Markov models for known TF families available on the PFAM database or using pre-built .hmm files that come with this package.

Getting started

Package details

Bioconductor views FunctionalGenomics FunctionalPrediction GenomeAnnotation HiddenMarkovModel Sequencing Software Transcription
Maintainer
LicenseGPL-3
Version0.99.0
URL https://github.com/almeidasilvaf/tfhunter
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("almeidasilvaf/tfhunter")
almeidasilvaf/tfhunter documentation built on June 15, 2022, 9:49 a.m.