Files in almeidasilvaf/tfhunter
Identification and classification of plant transcription factors
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/ISSUE_TEMPLATE/issue_template.md
.github/SUPPORT.md
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/01_domain_annotation.R
R/02_classification.R
R/03_tf_counts.R
R/classification_utils.R
R/data.R
R/planttfhunter-package.R
R/sysdata.rda
R/utils.R
README.Rmd
README.md
codecov.yml
data/classification_scheme.rda
data/gsu.rda
data/gsu_annotation.rda
data/gsu_families.rda
data/tf_counts.rda
dev/01_create_pkg.R
dev/02_git_github_setup.R
dev/03_core_files.R
dev/04_update.R
inst/_pkgdown.yml
inst/extdata/PFAM.hmm
inst/extdata/self_built.hmm
inst/script/data_creation.md
man/annotate_pfam.Rd
man/classification_scheme.Rd
man/classify_tfs.Rd
man/figures/README-pressure-1.png
man/figures/logo.png
man/get_tf_counts.Rd
man/gsu.Rd
man/gsu_annotation.Rd
man/gsu_families.Rd
man/hmmer_is_installed.Rd
man/planttfhunter-package.Rd
man/tf_counts.Rd
tests/testthat.R
tests/testthat/test-03_tf_counts.R
tests/testthat/test-classification.R
tests/testthat/test-domain_annotation.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/vignette_bibliography.bib
vignettes/vignette_planttfhunter.Rmd
