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RTIGER: HMM-Based Model for Genotyping and Cross-Over Identification
Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors <doi:10.1093/plphys/kiad191>.
Getting started
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Package details |
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| Author | Rafael Campos-Martin [cre] (<https://orcid.org/0000-0002-1395-8571>), Sophia Schmickler [aut], Manish Goel [ctb], Korbinian Schneeberger [aut], Achim Tresch [aut] |
| Bioconductor views | GenomeAnnotation HiddenMarkovModel Sequencing |
| Maintainer | Rafael Campos-Martin <rfael.mpi@gmail.com> |
| License | GPL (>= 2) |
| Version | 2.1.0 |
| Package repository | View on CRAN |
| Installation |
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