RTIGERDataSet: This class is a generic container for RTIGER analysis
In RTIGER: HMM-Based Model for Genotyping and Cross-Over Identification
RTIGER-class R Documentation
This class is a generic container for RTIGER analysis
Description
This class is a generic container for RTIGER analysis
Slots
matobsNested lists. the first level is a list of samples. For each sample there are 5 matrices that contains the allele counts for each position.
paramsa list with the parameters after training.
infoList with phenotipic data of the samples.
ViterbiList of chromosomes with the viterbi path per sample.
ProbabilitiesComputed probabilites for the EM algorithm.
num.iterNumber of iterations needed to stop the EM algorithm.
RTIGER documentation built on March 31, 2023, 5:41 p.m.
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| RTIGER-class | R Documentation |
This class is a generic container for RTIGER analysis
Description
This class is a generic container for RTIGER analysis
Slots
matobsNested lists. the first level is a list of samples. For each sample there are 5 matrices that contains the allele counts for each position.
paramsa list with the parameters after training.
infoList with phenotipic data of the samples.
ViterbiList of chromosomes with the viterbi path per sample.
ProbabilitiesComputed probabilites for the EM algorithm.
num.iterNumber of iterations needed to stop the EM algorithm.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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