Man pages for RTIGER
HMM-Based Model for Genotyping and Cross-Over Identification
| ATseqlengths | The autosome chromosome lengths for Arabidopsis Thaliana. |
| calcCOnumber | Obtain number of Cross-Over events per sample and chromosome. |
| dev | Function to developers. It runs one EM step |
| fit | Call Julia code to fit the values |
| generateObject | Load data |
| myDat | A fitted example using three own samples of Arabidopsis. More... |
| optimize_R | Find the otimum R value for a given data set |
| plotCOs | Obtain number of Cross-Over events per sample and chromosome. |
| RTIGER | Load, Fit, and plot |
| RTIGERDataSet | This class is a generic container for RTIGER analysis |
| setupJulia | Installs the needed packages in JULIA to run the EM algorithm... |
| sourceJulia | Function needed before using RTIGER() function. It loads the... |
